Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 seq591 89.7 5e-13 >seq7 Length=55601358 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 ||||||| | ||||| || || || ||||| ||| | || || | || || || || Sbjct 47184642 CATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCCTTGAGGTTGAGAGTTC 47184583 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || || || | ||||| || || || |||||||| || || || || | Sbjct 47184582 A-GACACCATTGATAATGTAAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACC 47184524 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || || |||| || || ||||||||||| |||| |||| | ||||||| Sbjct 47184523 AGCAGAGNCTGATTTTCGCTGGGAAACAACTCGAGGATGGAAGAACCCTTGCTGATTACA 47184464 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || || ||||| | ||||| ||| | | |||||||| || Sbjct 47184463 ATATTCAGAAGGAGTCCACGCTCCATTTGGTGCTTCGTTTGAGAGGCGG 47184415 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 25165 ATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGT 25224 ||| |||| ||||| | ||||| ||||| || || || || | || || | ||||| Sbjct 47192351 ATTGAACAG-ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGT 47192293 Query 25225 CGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACC 25284 ||| | || || || || | || || || || || ||||||||||| || Sbjct 47192292 AGAATCGTCTGACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCC 47192233 Query 25285 GCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAG 25344 || ||||||||||| || |||| | || ||||| || || |||| |||| | Sbjct 47192232 TCCGGATCAGCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTGGC 47192173 Query 25345 CGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||| || || |||||| | || || ||| | | ||||| || || Sbjct 47192172 CGATTACAATATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGTTGAGGGGTGG 47192116 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || || || | || || | ||||| ||| | Sbjct 17086722 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCT 17086781 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || ||||||||||| || || |||||| Sbjct 17086782 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 17086841 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || |||| | || ||||| || || |||| |||| | |||||||||| Sbjct 17086842 CAAAGGCTGATTTTTGCTGGTAAACANCTTGAGGATGGGAGAACCCTTGCCGATTACAAT 17086901 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||| || || |||||| | || || ||| Sbjct 17086902 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 17086931 >seq591 Length=869021 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 25156 TAGTTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCAC 25215 |||||| ||| |||| ||||| | ||||| ||||| || || || || | || || Sbjct 243885 TAGTTTCTGATTGAACAG-ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAAC 243827 Query 25216 GATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGA 25275 | ||||| ||| | || || || || | || || || || || ||||| Sbjct 243826 CCTTGAAGTAGAATCGTCTGACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGA 243767 Query 25276 GGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 25335 |||||| || || ||||||||||| || |||| | || |||||||| || |||| || Sbjct 243766 GGGTATCCCTCCGGATCAGCAAAGGCTGATTTTTGCTGGTAAACAACTTGAGGATGGGAG 243707 Query 25336 AAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || | ||||||||||||||| || || |||||| | || || ||| Sbjct 243706 AACCCTTGCCGATTACAATATTCAGAAGGAGTCCACCCTCCACTTGGTG 243658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445080496363680