Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 8e-16 seq591 84.2 2e-11 >seq7 Length=55601358 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || || |||| || |||||||||||| ||||| ||| Sbjct 47183958 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAAGTAGAGAGTTC 47183899 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| ||| ||||| || ||| | || ||||| Sbjct 47183898 TGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCA 47183839 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||||||||||| ||| || |||||||| |||||| | || ||| || ||||| Sbjct 47183838 GCAAAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 47183779 Query 106439 CATACAAAAAGAATCTACACTACA 106462 ||| || || ||||| || || || Sbjct 47183778 CATTCAGAAGGAATCCACCCTCCA 47183755 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || |||||||| ||| ||||| || Sbjct 47191886 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 47191827 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | |||||| ||| ||| || || || || | ||| |||||| Sbjct 47191826 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAA 47191767 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| || ||||| | ||||| | || | | ||||| ||| Sbjct 47191766 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 47191707 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| |||||||| || | || || || |||||| | || || || Sbjct 47191706 ATACAGAAAGAATCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGG 47191660 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || || |||| || |||||||||||| |||| ||| | Sbjct 48398580 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTAGAGAGCTC 48398521 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||||||| ||||| || ||| | || ||||| Sbjct 48398520 TGATACAATTGATAATGTGAAAGCAAAAATTCAAGACAAGGAGGGCATTCCACCAGATCA 48398461 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || |||||||||| ||| || |||||||| |||||| | || ||| || ||||| Sbjct 48398460 GCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 48398401 Query 106439 CATACAAAAAGAATCTACACTACA 106462 ||| || || || || || || || Sbjct 48398400 CATTCAGAAGGAGTCCACCCTCCA 48398377 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| || || ||||| || ||||||||||| ||||| ||| | Sbjct 47184186 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 47184127 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || || ||| || |||||||| || | || || || Sbjct 47184126 TGATACCATTGATAATGTCAAGNCAAAGATCCAGGACAAAGAGGGNATTCCACCAGACCA 47184067 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||||||||| | ||| || || || | |||||| ||| | | ||||| || Sbjct 47184066 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 47184007 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || || |||||||| || || || || |||||| | || || ||| Sbjct 47184006 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGA 47183958 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || || |||| || || || |||||| |||| ||| | Sbjct 47191431 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACAATTACCTTGGAGGTGGAAAGCTC 47191372 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | ||||| ||| ||| ||||| || ||| | || ||||| Sbjct 47191371 TGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATACCACCAGATCA 47191312 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| |||||||||| ||| || || ||||| |||||| | || ||| || ||||| Sbjct 47191311 ACAGAGGCTTATTTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAA 47191252 Query 106439 CATACAAAAAGAATCTACACTACAT 106463 ||| ||||||||||| || || ||| Sbjct 47191251 CATTCAAAAAGAATCCACCCTTCAT 47191227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| || || ||||| || ||||||||||| ||||| ||| | Sbjct 48398808 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 48398749 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || || ||| || |||||||| || | || || || Sbjct 48398748 TGATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCACCAGACCA 48398689 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||||||||| | ||| || || || | |||||| ||| | | ||||| || Sbjct 48398688 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 48398629 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || || |||||||| || || || || |||||| | || || ||| Sbjct 48398628 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGA 48398580 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || |||||||| ||| ||||| || Sbjct 17087178 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 17087237 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | |||||| ||| ||| || || || || | ||| ||||| Sbjct 17087238 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAG 17087297 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| || ||||| | ||||| | || | | ||||| ||| Sbjct 17087298 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 17087357 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| || ||||| || | || || || |||||| | || || || Sbjct 17087358 ATACAGAAGGAATCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGG 17087404 >seq591 Length=869021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || || |||| || || ||||||||| | || ||| | Sbjct 242956 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTAGAGGTGGAAAGCTC 242897 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | ||||| ||| ||| ||||| || ||| | || ||||| Sbjct 242896 TGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATCCCACCAGATCA 242837 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || |||||||||| ||| || || ||||| |||||| | || ||| |||||||| Sbjct 242836 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACCTTGGCAGATTACAA 242777 Query 106439 CATACAAAAAGAATCTACACTACA 106462 ||| || |||||||| || || || Sbjct 242776 CATTCAGAAAGAATCCACCCTTCA 242753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402317346423392