Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 342 7e-88 seq1493 309 4e-78 >seq3 Length=12950713 Score = 342 bits (378), Expect = 7e-88 Identities = 416/562 (74%), Gaps = 10/562 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| || ||| | ||||| ||||||| | ||||||| |||| |||| | Sbjct 6095139 GAGCCACTCCTGGCCCCAAACCCCGACCGCTTCTGCATGTTCCCAATCCAATACCCCCAA 6095198 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| ||||| || ||||| ||||| ||||| ||||| Sbjct 6095199 ATCTGGGAAATGTACAAGAAAG-CCGAAGCCTCTTTCTGGACAGCCGAAGAGGTTGACCT 6095257 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | | ||| |||||||| || || | ||||| ||||||||| ||||||| || Sbjct 6095258 CTCCCAAGACCTCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCCACTTCATCACCCA 6095317 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| ||| |||||| ||| |||||||| ||| ||||| |||| ||||| Sbjct 6095318 CGTCCTCGCCTTCTTT-GCCGCCTCCGACGGCATCGTTCTCGAAAACCTTGCCGCCCGCT 6095376 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| || ||||| | ||||| ||| || ||||| |||||||||||||||| Sbjct 6095377 TCATGAAGGAAATCCAAGCCGCCGAGGCTCGTGCTTTCTACGGCTTCCAGATCGCCATCG 6095436 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || | ||| ||||| | || |||||| |||| ||| | || Sbjct 6095437 AGAACATCCACTCCGAGATGTACAGTCTCCTCTTGGAAACCTACATCAAAGACTCCACCG 6095496 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 | ||| | || || || |||||| |||| || | || | || || |||||| | | Sbjct 6095497 AAAAGAATCATCTGTTCCGCGCCGTCGATACCATCCCCTGTGTCGCCAAGAAGGCCCAAT 6095556 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC-ACTTTGCCGAGCGGCTCGTCGGCT 1456194 |||| || |||||| || | | |||| ||| |||||||| ||||||| || Sbjct 6095557 GGGCCTTGCGCTGGATC------GATGCCACCGACTCCTTCGCCGAGCGCCTCGTCGCCT 6095610 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | ||| |||||||||| ||||| ||||| ||||| |||||| | || ||||||||||||| Sbjct 6095611 TCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGCTTCTGCTCGATATTTTGGCTCAAGA 6095670 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 |||| ||| | ||||||||||| Sbjct 6095671 AGCGTGGCTTGATGCCCGGTCT 6095692 >seq1493 Length=4971659 Score = 309 bits (342), Expect = 4e-78 Identities = 392/528 (74%), Gaps = 16/528 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| | |||| | || |||||||| Sbjct 4756992 TGTTCCCTATTCAATACCCCCAAATCTGGGAAATGTACAAGAAAG-CAGAAGCCTCCTTC 4757050 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACA-CGGTCCACTGGGTGTCGCTGAGCG 1455870 ||||| || |||||||| |||||| ||| | ||| | ||| ||||| | || | || Sbjct 4757051 TGGACGGCGGAGGAGGTGGACCTCT-CGCAGGACATCAGTC-ACTGGAACACTCTTACCG 4757108 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| ||||||||||||| ||| || ||||| ||||| || ||| ||| ||| |||||| Sbjct 4757109 ACGGCGAGCGCCATTTCGTCACCCATGTCCTTGCCTTCTT-CGCTGCCTCCGACGGCATC 4757167 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||| || || |||||||| |||||||| |||||||| | | ||||| || Sbjct 4757168 GTACTCGAAAATCTTGCCGGCCGTTTTATGAAGGAGGTCCAGGTCTCCGAGGCTCGCGCC 4757227 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 |||||||| ||||||||||| || || ||||| ||||| || | ||| ||||| || Sbjct 4757228 TTTTACGGCTTCCAGATCGCTATAGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTC 4757287 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || |||||| | || ||| | || ||||| || ||||||| |||||| ||||| | Sbjct 4757288 GAAACCTACATAAAAGACTCCGTAGAGAAAAGCCGTCTCTTTCACGCCATTGACACCATT 4757347 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT-CGA 1456169 || | || | || |||||| ||||||| | |||||| || ||| ||| Sbjct 4757348 CCCTGCGTCACCAAGAAGGCCAACTGGGCCCTCCGCTGGATCGAC-------TCCTCCGA 4757400 Query 1456170 -CACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 ||| |||||||| ||||||| ||| ||| |||||||||| ||||| ||||| || || Sbjct 4757401 GTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAG 4757460 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || ||| ||||||||||||||||||| || ||||||||||| || || Sbjct 4757461 CTTTTGCTCCATCTTTTGGCTCAAGAAACGGGGCCTCATGCCAGGACT 4757508 Score = 100 bits (110), Expect = 4e-15 Identities = 221/323 (68%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACC 1456507 ||| | ||||| ||||| || || ||||||||| | || | | ||||| || || Sbjct 4757543 GGTCTCCACTGCGACTTCGCTTGCCTGCTCTACTCTATCATGCGGACCAAGC--TCC-CC 4757599 Query 1456508 GACGTGCCC---AAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGC 1456564 || | || | | | ||||| | ||| || || || || |||| ||||| ||| || Sbjct 4757600 GAGGAGCGCGTGAGGGAGATCGTGCGCGATGCTGTTGACATTGAGAGGGAGTTCGTCTGC 4757659 Query 1456565 GAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624 || |||| || ||| | | || ||||||| || | ||| | ||||||||||| Sbjct 4757660 GACGCGCTTCCTTGCGCGTTGGTGGGGATGAACGGGGCCT-TGATGAGTCAGTACATTGA 4757718 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 ||| || || || | |||||| ||||| || ||||| |||| ||| | Sbjct 4757719 GTTT-GTTGCTGATAGGTTGCTCGGTGCGCTTGGGTGCGG-GAAGGTGTACAATGTGCAG 4757776 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||| ||| ||||||||| |||| ||||| |||| ||||||||||| |||||| Sbjct 4757777 AACCCATTCGATTGGATGGAGCTGATTTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAG 4757836 Query 1456745 CGCGT-GGCGAGTACGCCAAGGC 1456766 ||||| || |||||| ||||| Sbjct 4757837 CGCGTGGGGGAGTACCAGAAGGC 4757859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177570166856838