Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq1155 114 2e-20 seq1493 104 3e-17 seq3 91.5 2e-13 seq4 86.0 9e-12 >seq1 Length=36501346 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 21164179 TCCCCCTTGATCCACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAAGAATACC 21164238 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| || ||||| ||| | || |||||||| || ||| Sbjct 21164239 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 21164298 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||| || || ||| || | |||||| ||||| ||||||||||| Sbjct 21164299 AACACCAATTCCACCAGCTGATTTGCTAATAATAGCACACTCCTTCAAAGTGTCATATAT 21164358 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||| ||||||||| ||||| | ||| || || ||| Sbjct 21164359 TCCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 21164401 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 |||||||||||||| | || |||||||| ||||||||||| || ||| | || | | Sbjct 21164537 GTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATAAGGTGG 21164596 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| | ||| || || || || || ||||||||| | || || | ||||||| Sbjct 21164597 TATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 21164656 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || || |||| ||| ||| ||| | | || || ||||| || | || || Sbjct 21164657 ATGTGTTGTGGTCTTTCCACCACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 21164716 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||| | || |||||| || || || || || Sbjct 21164717 GTTTTGAAACCAAAATAATCATAGTCAAAGTCCCTATCATAGATTAT 21164763 >seq1155 Length=2458243 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||| | ||| | || | | ||| |||| ||| || Sbjct 1420942 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGTAACATTGGAACAATGCC 1421001 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 || || | |||||||| ||| ||||||||| || | || ||||| || | ||| Sbjct 1421002 GTTGGACGTCCCATTTGTCCCACGAATATAACTGCCCGTAGCACGAATGTTGTGGACAGA 1421061 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || |||| || | |||||| ||||| || |||||||| Sbjct 1421062 GACACCGATTCCTCCAGCTGATTTACTTATGATAGCACACTCCTTCAAAGTTTCATATAT 1421121 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||||||||||||||| ||||| | ||| || |||||| Sbjct 1421122 CCCCTCTATGCTATCATCATTCATGCACACAAGGAAGCAGCTA 1421164 Score = 100 bits (110), Expect = 4e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | ||||||||||||||| ||||||||| || ||| | || | Sbjct 1421289 AGTTCCAGCATTGAAAAGTGTAGGAGATGCGTGGGTGAACCATCGTTGAGACATCATGTG 1421348 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| ||| | ||| |||||||| || || ||||| || | |||||| | |||||| Sbjct 1421349 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTGTGAATCCCAACCGCGACTCTCATCAA 1421408 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||| || || | | || || ||||| || | || || Sbjct 1421409 CATGTGTTGCGGCCTTTCCACGACCTTCCCTTGAACCTTTAAGAGGTAAGACCTCTCAAG 1421468 Query 70170 AGTTTTAAACCCAAAATA 70187 ||||| ||||||||||| Sbjct 1421469 GGTTTTGAACCCAAAATA 1421486 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||||||| | || ||||| ||||||||||| | | ||||||||||| || Sbjct 1419002 TAAAACTCTACGACTATAGATATTTGAAGTATATGGTTCAAAGCACTCATTATTTCCAAG 1419061 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCAT 68851 ||| ||| ||| |||||||| |||||||| ||||| | | |||||| | ||||| Sbjct 1419062 AATCTGACTAGTGGATGCAGTAGGCATAGGAGCCACGAGAAGTGAATTTCTCACACCAT 1419120 >seq1493 Length=4971659 Score = 104 bits (114), Expect = 3e-17 Identities = 231/342 (68%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || || ||||| |||| || | |||||| || || ||||| Sbjct 4757566 GCAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAG 4757507 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 ||| ||||| || || || || ||||||||||| |||| |||||||| ||| || |||| Sbjct 4757506 TCCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGG-AGCAAAAGCTTCCGGAGAAGA 4757448 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTATG 39792 |||| || || || || || || || || | ||| || | ||| | | | | Sbjct 4757447 AGATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGA--GTC 4757390 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| | ||||| | || ||||| | || || || || || || || || | Sbjct 4757389 GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTG 4757330 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||||| ||| || | ||||| | || || || | | || || ||||| Sbjct 4757329 AAAGAGACGGCTTTTCTCTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACAT 4757270 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || ||||| || || || ||||| || |||||||| Sbjct 4757269 CTCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAA 4757228 >seq3 Length=12950713 Score = 91.5 bits (100), Expect = 2e-13 Identities = 230/344 (67%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || || || ||||||| || | |||||| || || ||||| Sbjct 6095750 GCACGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAG 6095691 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| | |||||||| |||||||||||||| | |||| ||| | || || |||| Sbjct 6095690 ACCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCG-AGCAGAAGCTGCCGGAGAAGA 6095632 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACT-TGTATCATTAT 39791 |||| || || || || || || || || | ||| || | | | || | || Sbjct 6095631 AGATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGC---AT 6095575 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | ||||| | || ||||| ||||| || || || || | || Sbjct 6095574 CGATCCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGC 6095515 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 || |||| || ||||| ||||| | || || || | | ||||| |||| Sbjct 6095514 GGAACAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACA 6095455 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 | || || |||||||| || || || ||||| || ||||| ||| Sbjct 6095454 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAA 6095411 >seq4 Length=20812224 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||||||||| || | || |||||||| |||||||||| || ||| | ||| | | Sbjct 17336785 GTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCCCCGTTGAGACATCAGGTGG 17336726 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| | ||| || || || || | ||||||||| | || || | ||||||| Sbjct 17336725 TATGTTTTGACAGCAGAATCGATGTCTTCGTTATGAATTCCAACAGCAACCCTCATCAAC 17336666 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || || ||| ||| || ||| | | || || ||| | || | || || Sbjct 17336665 ATGTGTTGTAGTCTTTCCACAACCTTACCTTGAACCTTTAAGAGGAAGGACCTCTCAAGG 17336606 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||| | || |||||| || || || || || Sbjct 17336605 GTTTTGAAACCAAAATAATCATAGTTAAAGTCCCTATCATAGATTAT 17336559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686887342686360