Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq340 109 1e-18 seq4 84.2 5e-11 >seq340 Length=1803 Score = 109 bits (120), Expect = 1e-18 Identities = 180/253 (71%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 332036 TAATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTAC 332095 ||| || | ||||||||| |||| || |||||||||||| |||| || ||||||| ||| Sbjct 351 TAAAGCTCCATCTTTCTCTATATATTGACGATATTCATCTAATGTGGTCGCACCAA-TAC 293 Query 332096 A-CGAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCAT 332154 | | || ||||| | || ||| || || |||| |||||| | || | ||| || Sbjct 292 ATTGTATTTCACCCCTTGCAAGAGCCGGTTTAAACATATTTGACGCATCTAAAGATCCTG 233 Query 332155 TACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTT 332214 || || ||| || || || ||| ||||||||||||| || |||| ||| ||| | Sbjct 232 TA---GCACCACCTGCTCCCACAATAGTATGAATTTCATCTATAAAAAGGATAATATCGT 176 Query 332215 CACGTTTCTTTAGTTCTTT--TAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATA 332272 || ||||| | ||| || || || || || ||||| |||||||| | || | ||| Sbjct 175 CATTTTTCTCCAATTCATTCATAACAGCTT-TC-ATGCGCTCTTCAAACTGTCCTCTATA 118 Query 332273 CTTAGTACCAGCA 332285 ||||| || ||| Sbjct 117 TTTAGTTCCTGCA 105 >seq4 Length=20812224 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 332165 ACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCAC--GTTTC 332222 ||| |||||||| | | ||||||| ||||||||||||| ||||| | || | ||| Sbjct 17804206 ACCTGCCCCAACAACAGTATGAATCTCATCAATGAAAAGGATAGTCTGACCATCAGATTC 17804265 Query 332223 T-TTAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACC 332281 | ||| |||||| |||| | | | | ||||||||||| ||||| ||||| | ||| Sbjct 17804266 TGTTACTTCTTTAAGCACAGCTTTCAGCCTATCTTCAAATTCTCCACGGTACTTTGCACC 17804325 Query 332282 AGCAGTCAATGCACC 332296 |||| ||| |||||| Sbjct 17804326 AGCAATCAGTGCACC 17804340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113794736890952