Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 seq591 105 6e-18 seq11 100 2e-16 seq5 95.1 1e-14 seq4 89.7 4e-13 >seq7 Length=55601358 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | |||||| | ||||| || | || || || || ||||||||||| ||| | Sbjct 47192116 CCACCCCTCAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCC 47192175 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | | || || ||||||||||| || |||| || | || |||||||| || Sbjct 47192176 AGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGG 47192235 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||| || |||||| || | | || | ||||| | | ||| ||| Sbjct 47192236 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACT 47192295 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | ||||| |||| ||||||||||||||| ||||| Sbjct 47192296 TCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 47192342 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| ||||| |||| ||||| || ||||| |||||||| || | Sbjct 37789129 CCACCGCGAAGACGCAGCACCAAGTGTAGGGTAGACTCCTTTTGGATATTGTAATCAGCC 37789070 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| || || || || || | ||||| | |||||| || || || Sbjct 37789069 AAGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGA 37789010 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||| || |||||| || | | | || | ||||| | | ||| || Sbjct 37789009 ATACCCTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCTACC 37788950 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||||| || ||||||||||||||||| Sbjct 37788949 TCAAGGGTGATTGTCTTTCCCGTCAACGTCTTCACAAAGATTTGCAT 37788903 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 ||||| | ||||| || | || || || || ||||||||||| ||| | | | | | Sbjct 17086939 AACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTC 17086880 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | || || || |||||||| || |||| || | || |||||||| || | ||||||| Sbjct 17086879 CCATCCTCAAGNTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCT 17086820 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || |||||| || | | || | ||||| | | ||| ||||| || ||| Sbjct 17086819 TTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTT 17086760 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||||| |||| ||||||||||||||| ||||| Sbjct 17086759 ATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 17086722 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | ||| || || || ||||| ||||| || Sbjct 47180059 TGCCACCCCTCAAACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAATCAG 47180118 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | |||| || || |||||||| ||| |||| || | ||| |||||||| | Sbjct 47180119 CAAGGGTTCTACCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAG 47180178 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || |||||| || | | || | || || | || ||| | Sbjct 47180179 GGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCGGAGGATTCCA 47180238 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| ||| || |||| ||||||||| ||||||||||| Sbjct 47180239 CCTCGAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 47180287 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | |||||||| | ||| || || || ||||||||||| || Sbjct 47184413 TGCCGCCTCTCAAACGAAGCACCAAATGGAGCGTGGACTCCTTCTGAATATTGTAATCAG 47184472 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | || ||||| ||||| || ||| |||| || | ||| || || || | Sbjct 47184473 CAAGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCGAAAATCAGNCTCTGCTGGTCTGGAG 47184532 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| || | | || | ||||||| |||| Sbjct 47184533 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTTACATTATCAATGGTGTCTGAACTCTCAA 47184592 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| ||| || |||| ||| || |||||||||||||| Sbjct 47184593 CCTCAAGGGTAATAGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 47184641 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || ||| ||||| || | ||||| ||||| || || ||||| || Sbjct 47184187 CCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCCGCA 47184246 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| |||||||| ||||| | || || | ||| || || || || Sbjct 47184247 AGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 47184306 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| |||||| ||||| | || | || |||| || || Sbjct 47184307 ATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCACC 47184366 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| | ||| || |||| ||| || |||||||||||||| Sbjct 47184367 TCTAAGGTTATGGTTTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 47184413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | ||||| || | || || || || ||||||||||| ||| Sbjct 17087176 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCA 17087117 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | | || || ||||||||||| || |||| || | |||||||||||| || Sbjct 17087116 AGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGGG 17087057 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || ||| ||| || | | || | || |||| || || Sbjct 17087056 ATGCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACC 17086997 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||||| | ||| || |||| ||| |||||||| || |||||| Sbjct 17086996 TCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTCACAAAAATCTGCATA 17086949 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || ||| ||||| || | ||||| ||||| || || ||||| || Sbjct 48398809 CCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGTATGTTGTAATCCGCA 48398868 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| |||||||| ||||| | || || | ||| || || || || Sbjct 48398869 AGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGG 48398928 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| |||||| ||||| | || | || |||| || || Sbjct 48398929 ATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCACC 48398988 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| | || || |||| ||| || |||||||||||||| Sbjct 48398989 TCTAAGGTTATGGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 48399035 >seq591 Length=869021 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 ||||| | ||||| || | || || || || ||||||||||| ||| | | | | | Sbjct 243650 AACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTC 243709 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | || || || |||||||| || |||| || | || |||||||| || | ||||||| Sbjct 243710 CCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCT 243769 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || |||||| || | | || | ||||| | | ||| ||||| || ||| Sbjct 243770 TTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTT 243829 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||||| |||| ||||||||||||||| ||||| Sbjct 243830 ATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 243867 >seq11 Length=19732206 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||||||| | |||| |||| ||||| || || ||| Sbjct 11449198 GTGGACTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGTTGCTTTCCG 11449257 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| |||||||| || | ||||| || || |||||| | || Sbjct 11449258 GCGAAGATGAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGTATCTTGGTCTTG 11449317 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| |||||| Sbjct 11449318 ACGTTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGAGTT 11449377 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 || || || |||||||| |||| Sbjct 11449378 TTTACGAATATTTGCATCCCTGC 11449400 >seq5 Length=37180910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 32956877 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 32956818 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | ||||| || || ||||||| || Sbjct 32956817 GCGAAGATGAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTG 32956758 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | || ||||| || || Sbjct 32956757 ACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTC 32956698 Query 27231 TTCACAAAGATTTGCATAGCTGCTA 27255 || ||||| || ||||| ||||||| Sbjct 32956697 TTGACAAATATCTGCATTGCTGCTA 32956673 >seq4 Length=20812224 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||| ||| | | |||| |||| |||||||| || || Sbjct 18691248 GTGGACTCTTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTTCCT 18691189 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| ||||| || || | ||||| || || |||||| || Sbjct 18691188 GCAAAGATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 18691129 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | || ||||| || ||| Sbjct 18691128 ACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTT 18691069 Query 27231 TTCACAAAGATTTGCAT---AGCTGCTA 27255 |||||||| |||||||| |||||||| Sbjct 18691068 TTCACAAATATTTGCATTGCAGCTGCTA 18691041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424921457958888