Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1493 122 1e-22 seq3 122 1e-22 seq1 116 5e-21 seq5 111 2e-19 seq4 107 2e-18 seq7 102 1e-16 seq1155 95.1 2e-14 >seq1493 Length=4971659 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| |||||||| || ||||| || ||||| || ||||||||||| || Sbjct 4757551 GTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGCATGAGGCC 4757492 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||| ||||| | |||| | || | ||| || |||||||||||||| ||||| || || Sbjct 4757491 CCGTTTCTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCA 4757432 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || | ||||| ||||||||||| Sbjct 4757431 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 4757402 >seq3 Length=12950713 Score = 122 bits (134), Expect = 1e-22 Identities = 173/243 (71%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || |||||||| || || ||||| || |||||| ||||| ||||| | || Sbjct 6095735 GTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCAAGCC 6095676 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | |||| | || | |||||| |||||||||||||| ||||| || || Sbjct 6095675 ACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCA 6095616 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | ||||| |||||||||||| | | ||||| | ||| || || Sbjct 6095615 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGG---TGGCATCGATCCAGCGCAAGGC 6095559 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 ||||| |||||||| | | ||| || | || | || ||| || | || ||||| Sbjct 6095558 CCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAACAGATGATTCTT 6095499 Query 122910 TTC 122912 ||| Sbjct 6095498 TTC 6095496 >seq1 Length=36501346 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| ||||| ||||| || ||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 21164524 CTGTGGTCTAGGTGTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTG 21164583 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| || |||||| | | ||||||| ||||||||| || || || | || Sbjct 21164584 AGACATAAGGTGGTATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGC 21164643 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| ||||| |||||| | | || | || || || | || | Sbjct 21164644 AACCCTCATCAACATGTGTTGTGGTCTTTCCACCACCTTACCTT-GAACCTTTAAGAGGT 21164702 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || | ||||||||||||||| |||||| ||| || | ||| |||||| Sbjct 21164703 AGGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCC 21164750 >seq5 Length=37180910 Score = 111 bits (122), Expect = 2e-19 Identities = 211/307 (69%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | | ||||| || ||||| || | || ||||| | | ||||| Sbjct 1710434 ATCAAGAATGTCAGCCCTGTTAGTAGCGGCAATGACAATGATACCAGTATTACCCTCAAA 1710375 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | ||| || | || |||||||| |||||||| || Sbjct 1710374 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC--- 1710318 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| |||| || | |||| | || || |||||||| ||||||| || ||||| || Sbjct 1710317 ACCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 1710258 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| ||| || ||| | | || | |||||| || | ||||| |||||||| Sbjct 1710257 TGGAGCATTCTCTTTGGCCTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCAAC 1710198 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCG 11777 ||||||||||||||| | | | ||| | || | ||||||||| || |||||| | Sbjct 1710197 AAACATCTCCACAAACTCAGAACCTGAG-ATTGAAAAAAATGGGACACCTGCTTCACCTG 1710139 Query 11778 CGATGGC 11784 | || || Sbjct 1710138 CAATAGC 1710132 >seq4 Length=20812224 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||||||| | ||||| || |||||||| || ||||| | ||| ||| ||||| | ||| Sbjct 17336798 CTGCGGTGTAGGTGTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCCCCGTTG 17336739 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || |||||| | | ||||||| |||||||| || || || | || Sbjct 17336738 AGACATCAGGTGGTATGTTTTGACAGCAGAATCGATGTCTTCGTTATGAATTCCAACAGC 17336679 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| ||| | |||||| | | || | || || || | || Sbjct 17336678 AACCCTCATCAACATGTGTTGTAGTCTTTCCACAACCTTACCTT-GAACCTTTAAGAGGA 17336620 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || | ||||||||||||||| |||||| ||| || | | | |||||| Sbjct 17336619 AGGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTTAAAGTCCC 17336572 >seq7 Length=55601358 Score = 102 bits (112), Expect = 1e-16 Identities = 301/460 (65%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || ||||| || | |||||||| | | ||||| Sbjct 25645630 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 25645689 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||| || | || || ||||| |||||||| || | Sbjct 25645690 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCTCC---A 25645746 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | ||| | || || |||||||| ||||||| |||||||| || Sbjct 25645747 CCAATTCCAGTTCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 25645806 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||||| ||| | | || | ||| ||||| | ||||| ||||||||| Sbjct 25645807 GGGGCGTTTTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAACA 25645866 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | |||| | || | ||||| ||| | |||||| || Sbjct 25645867 AACATCTCAACAAACTCAGAACCAGA-TATTGAAAAAAATGGAACACCAGCTTCACCAGC 25645925 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || ||| | |||||||| || || ||||| ||| | ||||| | ||| Sbjct 25645926 AATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCTTT 25645985 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || ||| || | ||||| || | ||| ||||| ||||| | ||| Sbjct 25645986 AGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 25646045 Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||||| | || | ||| |||||||| Sbjct 25646046 CATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATCA 25646085 >seq1155 Length=2458243 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || || || ||||||||||| || || || | |||||| ||||| | ||| Sbjct 1421278 TGAGGCCTAGGAGTTCCAGCATTGAAAAGTGTAGGAGATGCGTGGGTGAACCATCGTTGA 1421337 Query 112001 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| ||| ||| | ||| || |||| || ||||| ||| ||| || || | || Sbjct 1421338 GACATCATGTGGTAAGTTCTGACAG-CAGATTCTATGTCATCCTTGTGAATCCCAACCGC 1421396 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 ||| | ||| ||||||| || || |||||| || | || | || || || | || | Sbjct 1421397 GACTCTCATCAACATGTGTTGCGGCCTTTCCACGA-CCTTCCCTTGAACCTTTAAGAGGT 1421455 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | ||||||||||||||| ||||| ||| || | || |||||| Sbjct 1421456 AAGACCTCTCAAGGGTTTTGAACCCAAAATAATCATAGTCGAAGTCCC 1421503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012381850400