Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 159 4e-34 seq1493 152 6e-32 seq5 111 2e-19 seq11 98.7 1e-15 seq7 91.5 2e-13 >seq3 Length=12950713 Score = 159 bits (176), Expect = 4e-34 Identities = 386/570 (68%), Gaps = 21/570 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCA-AGCTGATATTCTCCA 129785 |||||||||||| ||||| || |||||||| || ||||| | | || | ||| ||||| Sbjct 6096035 ATAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTCCCCTGGAGAGAT-ATAAGCTCCA 6095977 Query 129786 TAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGAG 129843 | ||||||| || |||| | | || || | | || ||||| | || || Sbjct 6095976 TCCAATCAAAGGGATTCTGAACATCGTACACCTTCCCG-CA-TCCAAGCGCACCAAGCAG 6095919 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 ||||||| ||| |||| || |||| | |||| ||| |||||| || | | Sbjct 6095918 CCGATCCGCGACAAACTCGATATACTGACTCATCAGCTCCCCGTTCATCCCCACCAACGC 6095859 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 ||| || |||||||| | | ||| || |||| ||||| || ||||| ||||| || | Sbjct 6095858 ACAGGGAAGCGCGTCGCACACAAACTCCCTCTCTATGTCAACCGCTTCGCGCACAATCTC 6095799 Query 129964 GTGAATGGTCTCC---GTGCCAGGTCTAT--TGCGCAAAGTCTTGAAGAGTTCCACGGCA 130018 | | | |||| ||| || | | || | | || | ||||| |||| | Sbjct 6095798 CTTCACGCGCTCCTCGGTG--AGCTTCTTCCTGAGGAGAGAGTACAAGAGG--CACG-CG 6095744 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || |||||| || || || || || |||||||| || |||||| ||||| ||| Sbjct 6095743 AAGTCGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGC 6095684 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 || | || |||||||| | ||| || |||| || || ||| ||||||||||| ||| Sbjct 6095683 ATCAAGCCACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCC 6095624 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198 || || || ||||| || | ||| ||||| || |||||| || | | ||| | ||| Sbjct 6095623 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGG---TGGCATCGATCCAG 6095567 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 || ||||| || ||||| || ||| ||| |||| ||| | || || || || Sbjct 6095566 CGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAACAGA 6095507 Query 130259 TCCTTCTTTTCTGATGGA-TCTTTGATGTA 130287 | |||||||| | |||| ||||||||||| Sbjct 6095506 TGATTCTTTTC-GGTGGAGTCTTTGATGTA 6095478 >seq1493 Length=4971659 Score = 152 bits (168), Expect = 6e-32 Identities = 314/459 (68%), Gaps = 20/459 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785 || ||||| || ||||||||||||||||| |||||||| | || || || || ||||| Sbjct 4757850 TACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCA-GC-GAAATCAGCTCCA 4757793 Query 129786 TAAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAG 129840 | |||| |||||||||| ||| | || || | | ||| |||| | ||| Sbjct 4757792 TCCAATCGAATGGGTTCTGCACATTG---TACACCTTCCCG-CAC-CCAAGCGCACCGAG 4757738 Query 129841 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG 129900 | | ||| | || |||||||||||| | |||| | |||||| || | | Sbjct 4757737 CAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCAA 4757678 Query 129901 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT 129960 || || |||||||| ||| |||| || |||||||||| ||||| || |||||||| Sbjct 4757677 CGCGCAAGGAAGCGCGTCGCAGACGAACTCCCTCTCAATGTCAACAGCATCGCGCACGAT 4757618 Query 129961 GGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG---GC 130017 | | | |||| | | | | |||| | | |||| || | || Sbjct 4757617 CTCCCTCACGCGCTCCTCGGGGAGCTTGGTCCGCATGATAGAGTAGAG---CAGGCAAGC 4757561 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || ||||||||||||||| |||||||||||||| || ||||| || ||||| Sbjct 4757560 GAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGG 4757501 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| ||||| ||||| | ||| || || | ||||| || ||||||||||| || Sbjct 4757500 CATGAGGCCCCGTTTCTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCC 4757441 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||| || || ||||| || | ||| ||||| || ||||| Sbjct 4757440 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGA 4757402 >seq5 Length=37180910 Score = 111 bits (122), Expect = 2e-19 Identities = 180/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| || ||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 1710433 TCAAGAATGTCAGCCCTGTTAGTAGCGGCAATGACAATGATACCAGTATTACCCTCAAAT 1710374 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 1710373 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 1710317 Query 14216 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 ||| || | || | |||| | || || || ||||||||||| | ||||| || ||| Sbjct 1710316 CCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 1710257 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 1710256 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCAA 1710199 Query 14331 CAAACATCTCCACAAA 14346 |||||||||||||||| Sbjct 1710198 CAAACATCTCCACAAA 1710183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 214/319 (67%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| |||| || || || ||||| ||||| | ||||| || || Sbjct 23304741 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA-- 23304684 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | ||||| | | ||| | || ||||||||||| ||||| |||||||| || Sbjct 23304683 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 23304624 Query 14270 CATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || || ||| | | | ||||| | ||| | ||| ||| ||||| || || Sbjct 23304623 CACGGCGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCC 23304565 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||| | |||||| || | | || | || || || || || | ||| || Sbjct 23304564 CACAAATAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTCCCC 23304505 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 ||| | || | || || || |||||||| || || ||| ||| | |||| | |||| Sbjct 23304504 CGCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGGTGGCCCCACCAGAA-GACACC 23304446 Query 14449 ACGT-GGGATCCTGGCACC 14466 | | || ||| | ||||| Sbjct 23304445 CCTTCGGAATCTTCGCACC 23304427 >seq11 Length=19732206 Score = 98.7 bits (108), Expect = 1e-15 Identities = 241/363 (66%), Gaps = 7/363 (2%) Strand=Plus/Minus Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 11921 || |||||| | ||||| ||| ||| | || ||| || || ||||| ||| | Sbjct 6228091 ACCCCCTTCCACCCACGCTCCCCCTACGCCGCCTCCAAATGCGCTGCACACTGGTACACT 6228032 Query 11922 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAG 11981 ||| ||||| || ||||||| |||| || ||| ||| ||||| |||||||||||| Sbjct 6228031 GTGAACTACCGTGAGGCCTATGGACTCTACGCCTGCAATGGCATTCTTTTCAACCACGAG 6227972 Query 11982 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATC 12041 || || || || ||| | |||||||||| |||||||| | | | ||| Sbjct 6227971 TCCCCTCGCCGCGGCGAGAATTTCGTGACGCGCAAGATCACGCGGGCCGTGGGCCGGATC 6227912 Query 12042 GTGGCGGGT---GAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 12098 || ||| | | || || || ||||||||||| | ||| ||||| ||| Sbjct 6227911 AAGGTCGGTCTCCAAAACAAGCTCTTT---TTGGGGAACCTTCAGGCCTCCAGGGATTGG 6227855 Query 12099 GGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 12158 || || |||||||||||| ||||||||||| | || || || || || | || Sbjct 6227854 GGCTTCGCTGGGGACTATGTTGAGGCCATGTGGCTGATGCTGCAGCAGGAGAAGCCCGAT 6227795 Query 12159 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTT 12218 || ||||| || || || | ||| | ||| | || ||||||| | || || ||||| Sbjct 6227794 GACTATGTTGTAGCCACCGAAGAGTCTCACACGGTTGAGGAGTTCTTGGAAGTG-GCTTT 6227736 Query 12219 AGG 12221 || Sbjct 6227735 CGG 6227733 >seq7 Length=55601358 Score = 91.5 bits (100), Expect = 2e-13 Identities = 227/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || || | ||| || || || ||||||| |||||| || | ||||| Sbjct 25645629 GTCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAA 25645688 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| ||||| |||| ||| || || | |||||||||| | Sbjct 25645689 ACCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCTCC--- 25645745 Query 14215 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 |||| || | | | ||| | || || || ||||||||||| | || || || || Sbjct 25645746 ACCAATTCCAGTTCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCA 25645805 Query 14272 TGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || ||||| ||| |||| || | ||| || |||| ||||| ||||| Sbjct 25645806 AGGGGCGTTTTCTTTGGC--CTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCA 25645863 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388 ||||||||||| ||||| | | | | | |||| | || || || || |||||| Sbjct 25645864 ACAAACATCTCAACAAACTCAGAACCAG-ATATTGAAAAAAATGGAACACCAGCTTCACC 25645922 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || ||| | ||||||||||| || ||||| Sbjct 25645923 AGCAATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGG 25645961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415881630440