Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 150 2e-31 seq1493 131 2e-25 seq1 125 8e-24 seq3 122 1e-22 seq7 116 4e-21 seq4 107 2e-18 seq1155 98.7 1e-15 >seq5 Length=37180910 Score = 150 bits (166), Expect = 2e-31 Identities = 287/417 (69%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || ||| | | || || ||||| ||||||| ||||| || | | ||||| Sbjct 1710434 ATCAAGAATGTCAGCCCTGTTAGTAGCGGCAATGACAATGATACCAGTATTACCCTCAAA 1710375 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||| ||||||||||||||||| | || ||||| | |||||||||| || Sbjct 1710374 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT---CC 1710318 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| || | |||| |||| || |||||||| ||||||| || || ||||| Sbjct 1710317 ACCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 1710258 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 ||| ||| || || |||| || | ||| || || || || || |||||| Sbjct 1710257 TGGAGCATTCTCTTTGGC--CTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCA 1710200 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||||||||| | | | | | |||| | || |||||| | |||||| Sbjct 1710199 ACAAACATCTCCACAAACTCAGAACCTG-AGATTGAAAAAAATGGGACACCTGCTTCACC 1710141 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || || | ||| ||||| || || || || ||| | || || |||| Sbjct 1710140 TGCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACC 1710081 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | ||| || || ||| | | |||||||||| | |||||||| ||||| Sbjct 1710080 TTTTGGTATGCGAGCCCCAACAGCGGTGAATCTCTCAGGCTTTTTAAGAAATTCCAC 1710024 Score = 89.7 bits (98), Expect = 6e-13 Identities = 246/372 (66%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCT 9670 ||| ||||||||||| |||| ||| |||||||| || ||||||| ||||| || | | Sbjct 23304741 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCACC 23304682 Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 || | || || | | ||| | |||||||| ||||||||||||||||| || ||| Sbjct 23304681 TCCAAGC--CCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 23304624 Query 9731 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 || || || | ||||| | ||||| | ||||| || | | || || || Sbjct 23304623 CACGGCGCCTTATTCTTCGCCTTC----TCAAACAAATCCCTCACCCTCGACGCACCAAC 23304568 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || ||||| | |||||| || | | || | || || || || || | ||| Sbjct 23304567 CCCCACAAATAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTC 23304508 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||||| | || | || ||||| ||||| || || || || ||| | | || | | Sbjct 23304507 CCCCGCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGGTGGCCCCACCA-GAAGAC 23304449 Query 9907 ACCTCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||| | | |||||||| || || || ||| | ||||| | ||| | |||||| | Sbjct 23304448 ACCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAA 23304389 Query 9966 CAATTTCTTCCA 9977 ||| |||| || Sbjct 23304388 CAACCTCTTGCA 23304377 >seq1493 Length=4971659 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || | Sbjct 4757402 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAGC 4757461 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||| | || | |||||||||||| || || ||||||||||| ||| ||||||||| Sbjct 4757462 TTTTGCTCCATCTTTTGGCTCAAGAAACGGGGCCTCATGCCAGGACTCACTTTCTCCAAC 4757521 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || ||||| || |||||||| |||||| Sbjct 4757522 GAACTCATCTCCCGAGACGAGGGTCTCCAC 4757551 >seq1 Length=36501346 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 || |||| |||| || |||||||||| ||||||||||||||| | ||| || | || | Sbjct 21164751 AGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 21164692 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || | ||| || |||||| ||||| ||||||| ||| | || || | || || Sbjct 21164691 GTTC-AAGGTAAGGTGGTGGAAAGACCACAACACATGTTGATGAGGGTTGCTGTTGGAAT 21164633 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 |||| ||||||||| ||||||| | | |||||| || ||||| ||| | ||| Sbjct 21164632 TCATAAGGAAGACATCGATTCTGCTGTCAAAACATACCACCTTATGTCTCAACGGTGGTT 21164573 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| ||| | ||||| || || ||||| || ||||| ||||| || Sbjct 21164572 CACTCATGCATCTCCAACTCTTTTTAATGCGGGAACACCTAGACCACA 21164525 >seq3 Length=12950713 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || | Sbjct 6095586 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGC 6095645 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| | || | ||||||||||||||| || | ||||| |||||| |||||||||| Sbjct 6095646 TTCTGCTCGATATTTTGGCTCAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAAC 6095705 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || || || || || || || |||||| Sbjct 6095706 GAACTCATATCGCGAGATGAAGGGCTCCAC 6095735 >seq7 Length=55601358 Score = 116 bits (128), Expect = 4e-21 Identities = 279/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || ||||||| || || || | | |||||| Sbjct 25645630 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 25645689 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || || || | |||||||||| || | Sbjct 25645690 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCT---CCA 25645746 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | ||| |||| || |||||||| ||||||| ||||| ||||| Sbjct 25645747 CCAATTCCAGTTCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 25645806 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||||| || |||| || | ||| || || || || || ||||||| Sbjct 25645807 GGGGCGTTTTCTTTGGC--CTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAA 25645864 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | |||| | || || ||| || |||||| Sbjct 25645865 CAAACATCTCAACAAACTCAGAACCAG-ATATTGAAAAAAATGGAACACCAGCTTCACCA 25645923 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| || ||| | || ||||| || || ||||| ||| | || || | ||| Sbjct 25645924 GCAATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCT 25645983 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 25645984 TTAGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 25646039 >seq4 Length=20812224 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 104148 ACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGGT 104206 ||| || |||||||||| ||||||||||||||| | || || | || || || | ||| Sbjct 17336581 ACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTTCCTCTTAAAGGTTC-AAGGT 17336639 Query 104207 GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAA 104266 | |||||| | ||| ||||||| ||| | || || | || |||||| ||| Sbjct 17336640 AAGGTTGTGGAAAGACTACAACACATGTTGATGAGGGTTGCTGTTGGAATTCATAACGAA 17336699 Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA 104326 ||||| ||||||| | | |||||| || |||||| ||| | ||||| ||| ||| Sbjct 17336700 GACATCGATTCTGCTGTCAAAACATACCACCTGATGTCTCAACGGGGGTTCACTCATGCA 17336759 Query 104327 ACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | ||||| || |||||||| || ||||| | ||| || Sbjct 17336760 TCTCCAACTCTTTTCAATGCGGGAACACCTACACCGCA 17336797 >seq1155 Length=2458243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 || |||| ||||| || ||||||||| ||||||||||||||| | || || | || | Sbjct 1421504 AGGGACTTCGACTATGATTATTTTGGGTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAG 1421445 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || | || | | |||||| || || ||||||| ||| | || || | || || Sbjct 1421444 GTTCAAGGGAAGGTCG-TGGAAAGGCCGCAACACATGTTGATGAGAGTCGCGGTTGGGAT 1421386 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGT 104315 ||| ||| ||||| || |||| || ||| | ||| ||| |||||| ||| | || Sbjct 1421385 TCACAAGGATGACATAGAATCTG-CTGTCAGAACTTACCACATGATGTCTCAACGATGGT 1421327 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| |||||| | || || || ||||||||||| || || || || ||| Sbjct 1421326 TCACCCACGCATCTCCTACACTTTTCAATGCTGGAACTCCTAGGCCTCAA 1421277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242580390760