Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1493 152 6e-32 seq3 140 4e-28 >seq1493 Length=4971659 Score = 152 bits (168), Expect = 6e-32 Identities = 567/868 (65%), Gaps = 22/868 (3%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || ||||| | ||||| | | |||| |||| |||||||| | || |||||| Sbjct 4756994 TTCCCTATTCAATACCCCCAAATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTTCTGG 4757053 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 | | |||||| | |||||| | ||| | | | ||| ||| || | ||| | Sbjct 4757054 ACGGCGGAGGAGGTGGACCTCTCGCAGGACATCAGTCACTGGAACACTCTTACCGACGGC 4757113 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 |||| |||||| ||| ||||| ||||||||||| || || || || || | Sbjct 4757114 GAGCGCCATTTCGTCACCCATGTCCTTGCCTTCTTCGCTGCCTCCGACGGCATCGTACTC 4757173 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 |||||| | | | ||| ||||| |||||| | ||||||| || | || ||| Sbjct 4757174 GAAAATCTTGCCGGCCGTTTTATGAAGGAGGTCCAGGTCTCCGAGGCTCGCGCCTTTTAC 4757233 Query 59802 GCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| ||| | | ||| || |||||||||| |||| ||| | |||| | Sbjct 4757234 GGCTTCCAGATCGCTATA-GAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAAAC 4757292 Query 59861 GTTGGTCAAGGA-TCCGGA-AGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCC 59917 | | || || |||| | ||| ||| | |||| || | ||||| || || | ||| Sbjct 4757293 CTACATAAAAGACTCCGTAGAGAAAAGCC--GTCTCTTTCACGCCATTGACACCATTCCC 4757350 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTT 59975 || || | | || || | |||||| | | ||||| || |||| ||| || || Sbjct 4757351 TGC-GTCACCAAGAAGGCCAACTGGGCCCTCCGCTGGATCGACTCCTCCGAG--TCCTTC 4757407 Query 59976 GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 || | || ||| | || || || ||||| || |||||||||||||| || || || Sbjct 4757408 GCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAGCTTTTGC 4757467 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 | || || |||||||| || || ||||||||||| || || | |||||||||||| || Sbjct 4757468 TCCATCTTTTGGCTCAAGAAACGGGGCCTCATGCCAGGACTCACTTTCTCCAACGAACTC 4757527 Query 60096 ATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATT 60154 || ||||| |||||||| ||||| || || || || | |||||| || | || Sbjct 4757528 ATCTCCCGAGACGAGGGTCTCCACTGCGACTTCGC-TTGCCTGCTCTACTCTATC--ATG 4757584 Query 60155 GGAAAAATGCCCTTCCAAGGA---TATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGA 60211 | | | || | || |||| | |||| || | ||| ||| | || Sbjct 4757585 CGGACCAAGCTC-CCCGAGGAGCGCGTGAGGGAGATCGTGCGCGATGCTGTTGACATTGA 4757643 Query 60212 GAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAAT 60271 ||| |||||| || || |||||||| ||| | | || ||| ||| | || Sbjct 4757644 GAGGGAGTTCGTCTGCGACGCGCTTCCTTGCGCGTTGGTGGGGATGAACGGGGCCTTGAT 4757703 Query 60272 GACGCAGTACATTCAGTTTGTCGCGGACCGCCT-CATGGCCCAGTTTGGAGAAGGACCAA 60330 || ||||||||| ||||||| || || | | | || | || || | ||| Sbjct 4757704 GAGTCAGTACATTGAGTTTGTTGCTGATAGGTTGCTCGGTGCGCTTGGGTGCGGGA-AGG 4757762 Query 60331 TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCA 60390 | ||| ||| | ||||| ||||| ||||||||| || ||| || | |||||||||| Sbjct 4757763 TGTACAATGTGCAGAACCCATTCGATTGGATGGAGCTGATTTCGCTGCAGGGGAAGACCA 4757822 Query 60391 ACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||| |||||||| || ||||| || Sbjct 4757823 ACTTCTTCGAGAAGCGCGTGGGGGAGTA 4757850 >seq3 Length=12950713 Score = 140 bits (154), Expect = 4e-28 Identities = 544/837 (65%), Gaps = 20/837 (2%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| | | ||| ||| |||||||| || ||||| Sbjct 6095209 TGTACAAGAAAGCCGAAGCCTCTTTCTGGACAGCCGAAGAGGTTGACCTCTCCCAAGACC 6095268 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | |||||| |||| ||| ||||| || ||||||| ||||| |||| Sbjct 6095269 TCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCT 6095328 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 |||| || || || || || || | ||||| | | | ||| ||||| Sbjct 6095329 TCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTTGCCGCCCGCTTCATGAAGGAAA 6095388 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 |||| |||||||| || | ||||||| | ||| ||| || |||| |||||| Sbjct 6095389 TCCAAGCCGCCGAGGCTCGTGCTTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCAC 6095447 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA-TCCG--GAAGAGAAGGCT 59888 ||||||| |||| ||| | | || | | |||| || ||| ||| |||| | Sbjct 6095448 TCCGAGATGTACAGTCTCCTCTTGGAAACCTACATCAAAGACTCCACCGAAAAGAA---T 6095504 Query 59889 GGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 ||||||||| ||| | || || |||| || | || || |||||||| || Sbjct 6095505 CATCTGTTCCGCGCCGTCGATACCATCCCCTGTGTCGCCAAGAAGGCCCAATGGGCCTTG 6095564 Query 59949 CAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 | ||||| | | | || || || | || ||| | || || || ||||| || Sbjct 6095565 CGCTGGATCGATGCCACCGACTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAG 6095624 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 |||||||||||||| ||| ||||| | || || |||||||| ||||||||| | ||| Sbjct 6095625 GGAATCTTCTTCTCCGGCAGCTTCTGCTCGATATTTTGGCTCAAGAAGCGTGGCTTGATG 6095684 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128 || || || | ||||||||||| || || || || || || || ||||| || || Sbjct 6095685 CCCGGTCTCACCTTCTCCAACGAACTCATATCGCGAGATGAAGGGCTCCACTGCGACTTC 6095744 Query 60129 GCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATTCACAA 60184 || ||| | | | || || | ||| |||| || || | || |||| | | | Sbjct 6095745 GC-GTGCCTCTTGTACTCTCTCCT-CAGGAAGAA-GCTC-ACCGAGGAGCGCGTGAAGGA 6095800 Query 60185 GATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAA 60244 |||||| | || ||| | ||||| ||||| | || |||||||| || Sbjct 6095801 GATTGTGCGCGAAGCGGTTGACATAGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGTGC 6095860 Query 60245 ACTCATAGGTATGGACGCTGGAG-AAATGACGCAGTACATTCAGTTTGTCGCGGACCGCC 60303 | | || ||| ||| |||| |||| ||||| || ||||||||||||| || | Sbjct 6095861 GTTGGTGGGGATGAACG-GGGAGCTGATGAGTCAGTATATCGAGTTTGTCGCGGATCGGC 6095919 Query 60304 T-CATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATG 60362 | | ||| | | ||||| || | |||| || | || || || || |||||| Sbjct 6095920 TGCTTGGTGC-GCTTGGATGCGGGAAGGTGTACGATGTTCAGAATCCCTTTGATTGGATG 6095978 Query 60363 GAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||| || || | | ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 6095979 GAGCTTATATCTCTCCAGGGGAAAACTAACTTCTTTGAAAAGCGCGTTGGGGACTAT 6096035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507665456560