Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq11 84.2 2e-11 seq5 84.2 2e-11 seq9 82.4 8e-11 >seq3 Length=12950713 Score = 107 bits (118), Expect = 2e-18 Identities = 540/832 (65%), Gaps = 54/832 (6%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || || ||||||||||| ||||| || ||||| | | || || |||||| Sbjct 6096035 ATAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTCCCCTGGAGAGATATAAGCTCCAT 6095976 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCCATG-AG 74578 ||| || || || |||| || |||| | |||| | | | || | ||| | || Sbjct 6095975 CCAATCAAAGGGATTCTGAACATCGTACAC---CTTCCCGCATCCAAGCGCACCAAGCAG 6095919 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTT-CTCCCGCATCCATGCCGATGAGTT 74637 |||||||| ||||| | || ||||| |||| ||||| | | ||| || | | Sbjct 6095918 CCGATCCGCGACAAACTCGATATACTGACTCATCAGCTCCC-CGTTCATCCCCACCAACG 6095860 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGG--ACAAT 74695 || || || || ||| | |||||| ||||| | || || | | | | ||||| Sbjct 6095859 CACAGGGAAGCGCGTCGCACACAAACTCCCTCTCTATGTC--AACCGCTTCGCGCACAAT 6095802 Query 74696 CTTGTGAATG---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACGG 74751 || | | | || | || | ||| | ||| ||| ||||||| ||| | |||| Sbjct 6095801 CTCCTTCACGCGCTCCTCGGTGAG---CTTCTTCCTGAGGAGAGAGTACAAGAGGCACG- 6095746 Query 74752 CAAACTCCTGATGCGAGCC-TTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 | || || || ||||| |||||||| ||| | ||| || || || | || || Sbjct 6095745 CGAAGTCGCAGTG-GAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCG 6095687 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| | ||||||||||| | |||||| || | |||||| || ||||||||| Sbjct 6095686 GGCATCAAGCCACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATT 6095627 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-----CGGT-GCATCGGAAGTC 74924 || ||||| || || |||||||| ||||| | ||||| |||| |||||| Sbjct 6095626 CCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGCATCG------ 6095573 Query 74925 ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA---GGGACAGTATCGATCGCT 74981 ||||| | ||||||| || || ||| | || |||| ||||||| || Sbjct 6095572 ATCCAGCGCAAGGCCCATTGGGCCTT---CTTGGCGACACAGGGGATGGTATCGACGGCG 6095516 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCG--GGA-TCCTTGACG-AGCTTGTCAATCATAAGTGA 75037 |||| || || |||| |||| ||| || |||| | || || || | | || Sbjct 6095515 CGGAACAG--ATG-ATTCTTTTCGGTGGAGTCTTTGATGTAGGTT-TCCAAGAGGAGACT 6095460 Query 75038 GTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCT 75096 |||| |||| || || || |||| || ||| |||| | ||||||||| || |||| Sbjct 6095459 GTACATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAAGCACGAGCCT 6095401 Query 75097 CTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTC 75154 | || || | ||||| |||| | | | | || || | ||||||||||| Sbjct 6095400 CGGCGGCTTGGATTTCCTTCATGAAGCGGGC--GGCAAGGTTTTCGAGAACGATGCCGTC 6095343 Query 75155 CGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTT 75214 |||||||| || || || || || |||| ||||||||||| |||| ||||| Sbjct 6095342 GGAGGCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTGAGGGA 6095283 Query 75215 GTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 |||||| | ||||| | | |||| ||| ||| | ||||||||| Sbjct 6095282 GTCCCAGTGGCGGAGGTCTTGGGAGAGGTCAACCTCTTCGGCTGTCCAGAAA 6095231 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 9065570 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9065629 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 9065630 TGAGCTACGAAAGCA 9065644 >seq11 Length=19732206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1090141 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1090082 Query 79684 TGAGCTACGAAAGCAAAAGGGGAACT 79709 |||||||||| ||| | | | ||||| Sbjct 1090081 TGAGCTACGAGAGCTAGATGTGAACT 1090056 >seq5 Length=37180910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3917462 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 3917521 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 3917522 CTGAGCTATGAAAGCA 3917537 >seq9 Length=21008463 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 7555023 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7555082 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 7555083 TGAGCTATGAAAGCA 7555097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198906340200