Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2499 488 7e-133 seq210 374 1e-98 seq1 194 2e-44 seq48 107 2e-18 seq831 104 3e-17 >seq2499 Length=151271 Score = 488 bits (540), Expect = 7e-133 Identities = 684/956 (72%), Gaps = 8/956 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | |||||||| | | | ||||| | | ||| Sbjct 4250 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTA 4192 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || ||||| || || || || || ||||| || |||||||| || || || Sbjct 4191 TTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 4132 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| ||||| || || || | | || | || Sbjct 4131 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCG 4072 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || || || || ||||||||||| | ||||| |||||| | ||| Sbjct 4071 GCTATAGGTTTGCATTTTTATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATAC 4012 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---AC 176442 || || || || || |||| |||| | |||||| | | ||| | ||||| || Sbjct 4011 AACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAC 3955 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 ||||| || | ||||||||||||| | || || |||||||||||||| ||||||| Sbjct 3954 ATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCA 3895 Query 176503 TACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562 || || || || || | || || | || |||||| | ||||||| | ||||||||| Sbjct 3894 TATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGA 3835 Query 176563 TCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTC 176622 || || |||||||||||||| || ||||| ||||| ||||| |||||| ||||||| Sbjct 3834 AGCTTTTCGGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTT 3775 Query 176623 CAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTT 176682 || || ||||| || ||||| ||||| ||||| || ||| | || ||||| ||||| || Sbjct 3774 CAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTC 3715 Query 176683 GGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAG 176742 || || || || || || ||||| || | || |||||| | | || || Sbjct 3714 GGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAA 3655 Query 176743 ACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATAC 176802 || || ||||| ||||| || | ||||||| ||| || ||||| ||||| || || Sbjct 3654 ACCACAGAAAATGAATCCGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTAT 3595 Query 176803 AACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAAT 176862 || ||||||||||| || ||||| ||||| || | |||||||| ||||| |||||| Sbjct 3594 AATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAAC 3535 Query 176863 AACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACT 176922 || || | | | || |||||||| || || | || || || | || |||||||| Sbjct 3534 AATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACC 3475 Query 176923 GCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTC 176982 || | ||| | |||| ||||| |||||| | || ||||| || |||||||| || || Sbjct 3474 GCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTA 3415 Query 176983 TTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTT 177042 | || | ||| || || ||| |||| ||||| ||||||| || |||||| Sbjct 3414 GTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTGATATTATTAACCGAGCTAACCTT 3355 Query 177043 GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 177098 ||||||||||| ||||| || ||||||||||| || ||||| || || || ||||| Sbjct 3354 GGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 3299 >seq210 Length=134088 Score = 374 bits (414), Expect = 1e-98 Identities = 565/801 (71%), Gaps = 10/801 (1%) Strand=Plus/Plus Query 176285 GAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCT 176344 ||||||| ||||| || || || | | || | || | || || || | || || | Sbjct 13002 GAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTT 13061 Query 176345 ACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAAC 176404 | || || ||||||||||| | ||||| |||||| | ||||| || || || || ||| Sbjct 13062 ATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAC 13121 Query 176405 TCGTTGTATTCCACTTCCTTATCGGTATCTCAGCT---TACATGGGACGCCAATGGGAAC 176461 | |||| | |||||| | | ||| | |||| |||||||| || | ||||||| Sbjct 13122 TAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTACATGGGTCGTGAGTGGGAAC 13178 Query 176462 TTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTG 176521 |||||| | || || |||||||||||||| ||||||||| || || || | | | Sbjct 13179 TTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAG 13238 Query 176522 CAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGC 176581 | || | || |||||| | ||||||| | ||||||||| || || |||||||||| Sbjct 13239 CCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGC 13298 Query 176582 CTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTC 176641 |||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || |||| Sbjct 13299 CTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTC 13358 Query 176642 TAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAG 176701 | ||||| | ||| || ||| | || ||| | ||||| || || || || || | | Sbjct 13359 TTATGCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTG 13418 Query 176702 CAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCAC 176761 | ||||| || | || |||||| | | || || || || ||||| ||||| Sbjct 13419 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCG 13478 Query 176762 AAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACG 176821 || | || |||| ||| || ||||| ||||| || || || ||||||||||| || | Sbjct 13479 CTAATGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATG 13538 Query 176822 GTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTT--CA 176879 |||| ||||| || | |||||||| ||||| |||||| || || | |||| || Sbjct 13539 GTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTC--TCATTCTTTACA 13596 Query 176880 CTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCAC 176939 |||||||| || || | || || || | || ||||||| || | ||| | |||| Sbjct 13597 TTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCAC 13656 Query 176940 AATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAA 176999 ||||| |||||| | || ||||| || |||||||| || || | || | ||| Sbjct 13657 TATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCG 13716 Query 177000 AGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCA 177059 || || ||| |||| ||||| ||||||| || ||||||||||||||||| ||||| Sbjct 13717 TGTAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCA 13776 Query 177060 CGAGCGTAATGCTCACAACTT 177080 || ||||||||||| || || Sbjct 13777 TGAACGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 194 bits (214), Expect = 2e-44 Identities = 422/627 (67%), Gaps = 19/627 (3%) Strand=Plus/Plus Query 176236 GTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATC 176295 || ||||| || |||||||| | || || ||| ||||| ||||||||||| ||| Sbjct 31713640 GTAGATATTGATGGTATTCGTGTGCCTGTTTTTAGATATCTACATTATGGAAACAATATC 31713699 Query 176296 ATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGG 176355 || || || | | | | | | | || || || | || || || | || | | Sbjct 31713700 ATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCATTTTTATTCGATATAG 31713759 Query 176356 GAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTC 176415 ||||||| | |||| |||||| | |||||||| || | || |||| |||| | Sbjct 31713760 GAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCACGAACTAATTGTTCTA 31713819 Query 176416 CACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAATGGGAACTTAGTTACAGA 176472 | ||| | | ||| | ||||| ||||||| || | ||||||||||||| | Sbjct 31713820 TATTTCTTACTTGGTGT---AGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 31713876 Query 176473 CTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA---GTATCTGCAGCGATG 176529 | || |||||||||| ||| ||||||||| || | || |||| | | || Sbjct 31713877 TTGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGTATTCGTTACTATT 31713936 Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589 | ||||| | ||||||| | ||||||||| || | |||||||||||| | || Sbjct 31713937 G---TTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTATGCCTTTAGGA 31713993 Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||| | ||||| Sbjct 31713994 ATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATT-TTATGCAT 31714052 Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCAC 176709 ||||| || ||| | || ||||| |||| |||| || || || ||| | ||||| Sbjct 31714053 CCATTTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAGTGTTATGCAT 31714112 Query 176710 GGAAGTCTTGTTACTTCTTCACTTGTT----AGAGAGACAACCGAAAACGAATCACAAAA 176765 || | || |||||| | || || || || || | ||||| ||||| || Sbjct 31714113 GGTTCCTTGGTAACTTCT--AGTTTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAA 31714170 Query 176766 CTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTA 176825 | ||||||| ||| | ||||| ||||| || || || ||||||| || || ||||| Sbjct 31714171 TGAAGGTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTTCATGGTTA 31714230 Query 176826 CTTTGGTCGTCTTATCTTCCAGTATGC 176852 ||| | || | |||||||| | ||| Sbjct 31714231 TTTTTGGCGATTGATCTTCCAATGTGC 31714257 >seq48 Length=168490 Score = 107 bits (118), Expect = 2e-18 Identities = 188/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 19299 GTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCGTATA 19358 ||||| | || |||||||| || ||| | || | ||||| | ||||||| ||| Sbjct 140114 GTAACTATTCAATATCCTTATGAAAAAATAATCTCATCAGAACATTTTCGTGGTCAAATA 140055 Query 19359 CACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAAT 19418 || | ||| ||||| || || || | ||||| || ||||| | || || ||||| || Sbjct 140054 CATTTTGAATTTGATAAATGCATTGTTTGTGAAGTATGTGTTCGTGTGTGTCCTATAGAT 139995 Query 19419 CTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGA--AATT 19476 ||||| | || |||||| | | ||||||| | | ||| | || | |||| Sbjct 139994 CTACCCATTGTTGATTGGAAACT--AGAAACAGATATTCGAAAAAAATGTTTGCTTAATT 139937 Query 19477 ATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAA 19536 | || || |||||| ||||| | || |||||||| | || ||||| ||||||| Sbjct 139936 ACAGTATTGATTTTGGAATCTGTATATCTTGTGGTAACTGTATTGAATATTGTCCAACAA 139877 Query 19537 ACTGTCTATCCATGACAGAAGAATATGAATTG 19568 | ||| |||| ||||| |||||||||||| || Sbjct 139876 ATTGTTTATCAATGACCGAAGAATATGAACTG 139845 >seq831 Length=321430 Score = 104 bits (114), Expect = 3e-17 Identities = 169/238 (71%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | |||||||| | | | ||||| | | ||| Sbjct 261841 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTA 261899 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || ||||| || || || || || ||||| || |||||||| || || || Sbjct 261900 TTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 261959 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGC-AGTCGTCCCAAGCTCAAA 176324 | ||||||||||| ||||||||||| ||||| | || || | | |||| | || | Sbjct 261960 TCTGGATCTCTACTTTATGGAAACAATATCATTTGTGGTGCAAATGGTCCTTA---CATA 262016 Query 176325 CG---CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGG 176379 | | || || | || || || ||||||||||| |||| | ||||| |||||| Sbjct 262017 TGTGACTATAGGTGTGCATTTTTATACAATCTGGGAAACAGCTTCTGTTGATGAATGG 262074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603475548343680