Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 4e-12 seq591 82.4 5e-11 >seq7 Length=55601358 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||| ||||| || ||||| ||||| | || || || ||| | Sbjct 48398580 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTAGAGAGCTC 48398521 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| |||||| ||||| || || |||| || Sbjct 48398520 TGATACAATTGATAAT--GTGAAAGCAAAAATTCAAGACAAGGAGGGCATTCCACCAGAT 48398463 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | |||||||| || ||||||||||| || | |||| |||| | || ||| Sbjct 48398462 CAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTAC 48398403 Query 27967 AACATCCAAAAAGAG 27981 ||||| || || ||| Sbjct 48398402 AACATTCAGAAGGAG 48398388 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||| ||||| || |||||| ||||| | || || |||||| | Sbjct 47191431 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACAATTACCTTGGAGGTGGAAAGCTC 47191372 Query 27849 CGA--CGATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGG 27904 || | || | ||| || || ||||| | | || ||||| || || | || | Sbjct 47191371 TGATACAATTGATAAT--GTGAAGACAAAGATTCAG--GACAAGGAGGGCATACCACCAG 47191316 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || || | ||||||||||| || |||||||| || | || | |||| | || | Sbjct 47191315 ATCAACAGAGGCTTATTTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACT 47191256 Query 27965 ACAACATCCAAAAAGA 27980 ||||||| |||||||| Sbjct 47191255 ACAACATTCAAAAAGA 47191240 >seq591 Length=869021 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||| ||||| || |||||| ||||| | || || |||||| | Sbjct 242956 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTAGAGGTGGAAAGCTC 242897 Query 27849 CGA--CGATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGG 27904 || | || | ||| || || ||||| | | || ||||| || || | || | Sbjct 242896 TGATACAATTGATAAT--GTGAAGACAAAGATTCAG--GACAAGGAGGGCATCCCACCAG 242841 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | |||||||| || || |||||||| || | || | |||| | |||| Sbjct 242840 ATCAGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACCTTGGCAGATT 242781 Query 27965 ACAACATCCAAAAAGA 27980 ||||||| || ||||| Sbjct 242780 ACAACATTCAGAAAGA 242765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851561654573