Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq7 113 4e-20 seq591 93.3 4e-14 seq4 91.5 1e-13 >seq7 Length=55601358 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || || || | ||||| || |||||| ||| || || || || ||||| Sbjct 47180057 CATGCCACCCCTCAAACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAATC 47180116 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| |||| |||| ||||| ||||| || || || || || | |||||| || | Sbjct 47180117 AGCAAGGGTTCTACCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGG 47180176 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | ||||||||| ||| || |||| | | | |||||| || || Sbjct 47180177 AGGGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCGGAGGATTC 47180236 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||| || | |||||| ||||||| |||| ||||| || ||||||||||||| ||| Sbjct 47180237 CACCTCGAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCATCTGTAC 47180293 Score = 109 bits (120), Expect = 5e-19 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| || || | |||||| || || ||| ||| || | Sbjct 17087191 ACAAAAATTTG--CATACCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCT 17087134 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| ||||||||||| |||| | || ||||||||||| || ||||| ||||| | Sbjct 17087133 GAATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATAAGCC 17087074 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||| || || | || | || ||||||||| |||||| |||| | | | | Sbjct 17087073 TCTGTTGATCCGGAGGGATGCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCAATGG 17087014 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| |||||| |||| || || ||||||| |||| || || ||||| || | Sbjct 17087013 TATCTGAACTCTCCACCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTCACAAAAATCT 17086954 Query 39281 GCAT 39284 |||| Sbjct 17086953 GCAT 17086950 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || | ||| |||||| || ||||||||||| ||||| |||| | | || Sbjct 47179848 AAAACCAAGTGCAAAGTGGACTCTTTCTGGATATTATAATCCGCAAGGGTTCTTCCATCT 47179907 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||| ||||| || ||||| ||||| | |||||| || | ||| | | ||| || ||| Sbjct 47179908 TCAAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGAATACCCTCCTTATCC 47179967 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||||| | | | ||||| |||||| |||| || ||| || Sbjct 47179968 TGAATCTTGGCTTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATAGTT 47180027 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| || || |||||||||||||| Sbjct 47180028 TTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 47180059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || ||||| || | |||||| || || ||| ||| || || ||||| ||||||||| Sbjct 17086948 CCACCCCTTAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCA 17086889 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | || ||||| ||||| || ||||| || || | ||||| || | || Sbjct 17086888 AGGGTTCTCCCATCCTCAAGNTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGG 17086829 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| ||| || |||| | | | || || ||| || || Sbjct 17086828 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACT 17086769 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || | || || |||| ||||| |||||||| ||||||| Sbjct 17086768 TCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCATCT 17086720 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || | ||| || || ||||| |||||||| ||||| || | | |||| Sbjct 17087389 AAAACCAAGTGCAAAGTGGATTCCTTCTGTATGTTATAATCCGCAAGGGTCCTTCCGTCT 17087330 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||||||| || ||||| ||||| | |||||| || | ||| | | ||| || ||| Sbjct 17087329 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGTATACCCTCCTTATCC 17087270 Query 39193 ATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| | | ||||| | | | | | ||||| |||||| |||| || || | Sbjct 17087269 -TGAATCTTTGTTTTCACATTGTCAATTGTATCTGAACTCTCCACTTCCAAGGTTATGGT 17087211 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| || || ||||| |||||||| Sbjct 17087210 CTTTCCTGTCAAAGTCTTGACAAAAATTTGCAT 17087178 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || | ||| ||||| ||||| |||||||| ||||| || | | |||| Sbjct 47191675 AAAACCAAGTGCAAAGTGGATTCTTTCTGTATGTTATAATCCGCAAGGGTCCTTCCGTCT 47191734 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||||||| || ||||| ||||| | ||| || || | ||| | | ||| || ||| Sbjct 47191735 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGATCTGGGGGTATACCCTCCTTATCC 47191794 Query 39193 ATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| | | ||||| | | | | | ||||| |||||| |||| || || | Sbjct 47191795 -TGAATCTTTGTTTTCACATTGTCAATTGTATCTGAACTCTCCACTTCCAAGGTTATGGT 47191853 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| || || ||||| |||||||| Sbjct 47191854 CTTTCCTGTCAAAGTCTTGACAAAAATTTGCAT 47191886 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || | |||||| || || ||| ||| || || ||||| |||||||| Sbjct 47192116 CCACCCCTCAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCC 47192175 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | || ||||||||||| || ||||| || || | ||||| || | || Sbjct 47192176 AGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGG 47192235 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| ||| || |||| | | | || || ||| || || Sbjct 47192236 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACT 47192295 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || | || || |||| ||||| |||||||| ||||||| Sbjct 47192296 TCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCATCT 47192344 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || || ||||| ||||| || ||||| ||||| |||| | | || Sbjct 48398824 AAAACCAAGTGCAGGGTAGATTCTTTCTGTATGTTGTAATCCGCAAGGGTTCTTCCATCT 48398883 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||||||| || ||||| ||||| | ||||||||| | ||| | | ||| || ||| Sbjct 48398884 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTATCC 48398943 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||| | | | | ||||| |||||| || | || || | Sbjct 48398944 TGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCACCTCTAAGGTTATGGTC 48399003 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| || || |||||||||||||| Sbjct 48399004 TTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 48399035 >seq591 Length=869021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || ||||| || | |||||| || || ||| ||| || || ||||| ||||||||| Sbjct 243641 CCACCCCTTAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCA 243700 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | || ||||| ||||| || ||||| || || | ||||| || | || Sbjct 243701 AGGGTTCTCCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGG 243760 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| ||| || |||| | | | || || ||| || || Sbjct 243761 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACT 243820 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || | || || |||| ||||| |||||||| ||||||| Sbjct 243821 TCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCATCT 243869 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || | ||| || || ||||| |||||||| ||||| || | | |||| Sbjct 243200 AAAACCAAGTGCAAAGTGGATTCCTTCTGTATGTTATAATCCGCAAGGGTCCTTCCGTCT 243259 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||||||| || ||||| ||||| | |||||| || | ||| | | ||| || ||| Sbjct 243260 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGTATACCCTCCTTATCC 243319 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||| | | | | ||||| |||||| |||| || || || Sbjct 243320 TGAATCTTAGCTTTCACATTGTCAATTGTATCTGAACTCTCCACTTCCAAGGTTATGGTT 243379 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| || || ||||| |||||||| Sbjct 243380 TTTCCTGTCAAAGTCTTGACAAAAATTTGCAT 243411 >seq4 Length=20812224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || || || |||||||| || || || |||| || ||||| Sbjct 18691254 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCGAGCTGC 18691195 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || ||||||||||| || | || | || ||| |||||| || || Sbjct 18691194 TTTCCTGCAAAGATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTG 18691135 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || |||||||| || | ||||| | || ||||| Sbjct 18691134 GCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTA 18691075 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||| |||||||| Sbjct 18691074 AGGGTTTTCACAAATATTTGCAT 18691052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532517517587