Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 4e-13 >seq7 Length=55601358 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || || | || || |||| ||||||||| || ||||| || ||||| ||||| | Sbjct 47179831 TGCCACCACGAAGCCTCAAAACCAAGTGCAAAGTGGACTCTTTCTGGATATTATAATCCG 47179890 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 | | ||| | |||||| | |||||| || ||| | |||||||| || || ||| || Sbjct 47179891 CAAGGGTTCTTCCATCTTCAAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGG 47179950 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | || || || || ||| || ||| |||| | | || |||| | Sbjct 47179951 GAATACCCTCCTTATCCTGAATCTTGGCTTTGACATTATCAATGGTATCTGAACTCTCCA 47180010 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | |||||||||||| || ||||| || || | ||| |||||||| Sbjct 47180011 CCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 47180059 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || || | || || |||| ||||||||| |||||||| || || || ||||| | Sbjct 47191658 TGCCACCACGAAGCCTCAAAACCAAGTGCAAAGTGGATTCTTTCTGTATGTTATAATCCG 47191717 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 | | || | ||||| | ||||| || ||| | |||||||| ||||| ||| || Sbjct 47191718 CAAGGGTCCTTCCGTCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGATCTGGGG 47191777 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | || || || || ||| ||| |||||||| | | | || |||| | Sbjct 47191778 GTATACCCTCCTTATCCTGAATCTTTGTTTTCACATTGTCAATTGTATCTGAACTCTCCA 47191837 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | ||| || || || || ||||| || || | |||||||||||| Sbjct 47191838 CTTCCAAGGTTATGGTCTTTCCTGTCAAAGTCTTGACAAAAATTTGCAT 47191886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409648323140241