Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1493 141 1e-28 seq1155 109 8e-19 seq1 107 3e-18 seq3 104 3e-17 seq4 86.0 9e-12 seq7 84.2 3e-11 >seq1493 Length=4971659 Score = 141 bits (156), Expect = 1e-28 Identities = 381/578 (66%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || ||||| || |||| || | |||||| || || ||||| Sbjct 4757565 CAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 4757506 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||| || || ||||| ||||||||||| || | || |||| | || || ||||| Sbjct 4757505 CCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 4757447 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || || || ||| || || ||| || | ||| || | | || | | || Sbjct 4757446 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG--GACTCGGAGGAGTCG 4757389 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| | |||||||| | || || || || || || || || | | Sbjct 4757388 ATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTGA 4757329 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 |||||| | |||| || | ||||| | ||| || || | | || || ||||| Sbjct 4757328 AAGAGACGGCTTTTCTCTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATC 4757269 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 ||||||||||| || || || || ||||| || |||||||| | || || | || | Sbjct 4757268 TCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAGACC 4757209 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || |||||| | ||| || | || | ||| || ||| || || || ||||| Sbjct 4757208 TGGACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCAGCG 4757149 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || || || | ||||| | | |||| ||| | || || | ||||||| | Sbjct 4757148 AAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAGTGA 4757089 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 |||| || | || | || || || || || ||||| || || || |||||||| || Sbjct 4757088 CTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTCTTG 4757029 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| | ||| || | |||||| || ||||| || Sbjct 4757028 TACATTTCCCAGATTTGGGGGTATTGAATAGGGAACAT 4756991 >seq1155 Length=2458243 Score = 109 bits (120), Expect = 8e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||||||||||| || ||| ||| |||||||| | |||||| ||| |||| || Sbjct 1420486 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTCCTGACCCCAACAATCTGCCAAACCT 1420545 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||| ||||| | ||| ||||| | |||| || ||||| || ||||||| Sbjct 1420546 GGTGCTTCATTGGGGCAAAACAAAGACCAATGTCCATTACTCTGAACTCTTTCCATAAAG 1420605 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| |||||||| | | |||||| || Sbjct 1420606 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCGTGCACGATGTTCCTC 1420655 >seq1 Length=36501346 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | || ||||||||||| || ||||| || ||| | || | | Sbjct 21164537 GTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATAAGGTGG 21164596 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||| | ||| || || ||||| | ||||||||| || || || | ||||||| Sbjct 21164597 TATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 21164656 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || |||||||| ||| |||| | | || || | ||| || | || | Sbjct 21164657 ATGTGTTGTGGTCTTTCCACCACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 21164716 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| ||||||||||| | || |||||| || || || || || Sbjct 21164717 GTTTTGAAACCAAAATAATCATAGTCAAAGTCCCTATCATAGATTAT 21164763 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||||||| || ||||| || || |||||||| || |||||| |||| |||| || Sbjct 21163705 TCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACCC 21163764 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||| ||||| | ||| ||||| | |||| || ||||| || ||||||| Sbjct 21163765 GGAGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 21163824 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| | ||||| | | ||| ||||| Sbjct 21163825 AGATCAGGCACCCAAAGAGCATAAAACAAATCTCTAGCACGATGCTCTTC 21163874 >seq3 Length=12950713 Score = 104 bits (114), Expect = 3e-17 Identities = 231/343 (67%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || |||||||||| || | |||||| || || |||||| Sbjct 6095749 CACGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 6095690 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| | ||||| || |||||||||||||| | || ||| | || || ||||| Sbjct 6095689 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCG-AGCAGAAGCTGCCGGAGAAGAA 6095631 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TG 48316 || || || ||| || || ||| || | ||| || | || ||| || | Sbjct 6095630 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA---GGAGTCGGTGGCATC 6095574 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || ||||| | |||||||| ||||| || || || || | || Sbjct 6095573 GATCCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCG 6095514 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 || ||| || ||||| || ||||| | ||| || || | | ||||| ||||| Sbjct 6095513 GAACAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACAT 6095454 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 |||||||| || || || || || ||||| || ||||| ||| Sbjct 6095453 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAA 6095411 >seq4 Length=20812224 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | || ||||||||||| || |||| || ||| | || | | Sbjct 17336785 GTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCCCCGTTGAGACATCAGGTGG 17336726 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||| | ||| || || ||||| | ||||||||| || || || | ||||||| Sbjct 17336725 TATGTTTTGACAGCAGAATCGATGTCTTCGTTATGAATTCCAACAGCAACCCTCATCAAC 17336666 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || ||||||| || |||| | | || || | | | || | || | Sbjct 17336665 ATGTGTTGTAGTCTTTCCACAACCTTACCTTGAACCTTTAAGAGGAAGGACCTCTCAAGG 17336606 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| ||||||||||| | || |||||| || || || || || Sbjct 17336605 GTTTTGAAACCAAAATAATCATAGTTAAAGTCCCTATCATAGATTAT 17336559 >seq7 Length=55601358 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||||||||| |||||||| ||||| ||| |||| || || || ||||| | Sbjct 49355452 ACAAGCAAAATCACAGTGAAGACCCTCATCCCTAGAGATTAGCTCATTTGAGAATGTCAA 49355393 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||| ||||||||||| | ||||| ||||| ||||| Sbjct 49355392 ACCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATAT 49355357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694647100283360