Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1493 111 2e-19 seq1 107 3e-18 seq1155 91.5 2e-13 seq4 86.0 9e-12 >seq1493 Length=4971659 Score = 111 bits (122), Expect = 2e-19 Identities = 374/578 (65%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || || || || || |||| || | |||||| || || ||||| Sbjct 4757565 CAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 4757506 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAGAAAAGAA 46748 || ||||| || || || || ||||||||||| || | || |||| ||| || ||||| Sbjct 4757505 CCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGAT-GGAGCAAAAGCTTCCGGAGAAGAA 4757447 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGA 46806 || || || || ||||| ||||| || | ||| || | ||| | | | | Sbjct 4757446 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGA--GTCG 4757389 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | | ||||| | ||||| || | || || || || || || || || | | Sbjct 4757388 ATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTGA 4757329 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| | |||| || | ||||| | || || || | | || || ||||| Sbjct 4757328 AAGAGACGGCTTTTCTCTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATC 4757269 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || |||||||| || ||||| ||||| || |||||||| | || || | | | Sbjct 4757268 TCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAGACC 4757209 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || ||||| | ||| || | | | ||| || || || || || ||||| Sbjct 4757208 TGGACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCAGCG 4757149 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || || || | ||||| | | |||| || || || || | ||||||| | Sbjct 4757148 AAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAGTGA 4757089 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 |||| || | || | || || || || || |||||||| || || |||||||| || Sbjct 4757088 CTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTCTTG 4757029 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 ||||| | ||| || | | ||||| || || || || Sbjct 4757028 TACATTTCCCAGATTTGGGGGTATTGAATAGGGAACAT 4756991 >seq1 Length=36501346 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 21164180 CCCCCTTGATCCACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAAGAATACCA 21164239 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| || ||||| || ||||||||||| || ||| Sbjct 21164240 TTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGAA 21164299 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || ||| || | |||||| ||||| |||||||| || Sbjct 21164300 ACACCAATTCCACCAGCTGATTTGCTAATAATAGCACACTCCTTCAAAGTGTCATATATT 21164359 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 21164360 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 21164401 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | || |||||||||||||||||||| || ||| | || | | Sbjct 21164537 GTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATAAGGTGG 21164596 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| | | | | || || || | ||||||||| ||||| || | ||||||| Sbjct 21164597 TATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 21164656 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || |||| ||| || |||| | | || || | ||| || | || | Sbjct 21164657 ATGTGTTGTGGTCTTTCCACCACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 21164716 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| ||||||||||| | || |||||| || || || || || Sbjct 21164717 GTTTTGAAACCAAAATAATCATAGTCAAAGTCCCTATCATAGATTAT 21164763 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||| || || || || | |||||||| || |||||| |||| ||||||| Sbjct 21163705 TCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACCC 21163764 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 ||| |||||| || || | ||| ||||| | |||| || ||| | || ||||||| Sbjct 21163765 GGAGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 21163824 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 |||||||| | ||| |||||| ||| | ||||| Sbjct 21163825 AGATCAGGCACCCAAAGAGCATAAAACAAATCTC 21163858 >seq1155 Length=2458243 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||| | ||| | | |||||||| | |||||| ||| ||||||| Sbjct 1420486 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTCCTGACCCCAACAATCTGCCAAACCT 1420545 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||||| || || | ||| ||||| | |||| || ||| | || ||||||| Sbjct 1420546 GGTGCTTCATTGGGGCAAAACAAAGACCAATGTCCATTACTCTGAACTCTTTCCATAAAG 1420605 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| |||||| ||| |||||||| Sbjct 1420606 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCG 1420640 >seq4 Length=20812224 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||||||||||||||||| || ||| | || | | Sbjct 17336785 GTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCCCCGTTGAGACATCAGGTGG 17336726 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| | | | | || || || | ||||||||| ||||| || | ||||||| Sbjct 17336725 TATGTTTTGACAGCAGAATCGATGTCTTCGTTATGAATTCCAACAGCAACCCTCATCAAC 17336666 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || ||| ||| ||| |||| | | || || | | | || | || | Sbjct 17336665 ATGTGTTGTAGTCTTTCCACAACCTTACCTTGAACCTTTAAGAGGAAGGACCTCTCAAGG 17336606 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| ||||||||||| | || |||||| || || || || || Sbjct 17336605 GTTTTGAAACCAAAATAATCATAGTTAAAGTCCCTATCATAGATTAT 17336559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712912129711680