Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq591 93.3 4e-14 >seq7 Length=55601358 Score = 107 bits (118), Expect = 2e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| || |||||||| || || |||||||| ||||| ||| | Sbjct 47184186 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 47184127 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || ||| || |||||||| || |||| || || Sbjct 47184126 TGATACCATTGATAATGTCAAGNCAAAGATCCAGGACAAAGAGGGNATTCCACCAGACCA 47184067 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||||||||||| | ||| || || || |||||||| ||| | || |||||||| Sbjct 47184066 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 47184007 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| || || || |||||| | || || ||||| Sbjct 47184006 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGG 47183959 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| || |||||||| || || |||||||| ||||| ||| | Sbjct 48398808 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 48398749 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || ||| || |||||||| || |||| || || Sbjct 48398748 TGATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCACCAGACCA 48398689 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||||||||||| | ||| || || || |||||||| ||| | || |||||||| Sbjct 48398688 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 48398629 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| || || || |||||| | || || ||||| Sbjct 48398628 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGG 48398581 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||| || |||||||| ||||| |||||| |||| ||| Sbjct 47180059 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 47180000 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || ||| || || || || ||||| ||||| Sbjct 47179999 GATACCATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAG 47179940 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || |||||| | |||||| | ||| | || ||||||||| Sbjct 47179939 CAGAGGCTTATCTTTGCTGGGAAACAACTTGAAGATGGAAGAACCCTTGCGGATTATAAT 47179880 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||| || || | || || || ||| | || || ||||||| Sbjct 47179879 ATCCAGAAAGAGTCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCA 47179831 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||| || || |||| || ||||| |||||| |||| |||| | Sbjct 47191431 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACAATTACCTTGGAGGTGGAAAGCTC 47191372 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || ||| ||| ||||| || ||| | || ||||| Sbjct 47191371 TGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATACCACCAGATCA 47191312 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| |||||||||| ||| || || |||||||||||| | || |||| || || || Sbjct 47191311 ACAGAGGCTTATTTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAA 47191252 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || ||||||||||| || || ||| | || | || || || |||||| Sbjct 47191251 CATTCAAAAAGAATCCACCCTTCATCTTGTCCTTCGCCTTCGTGGTGGC 47191203 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| || ||||| || || ||||| ||| ||||| ||| Sbjct 47191886 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 47191827 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || ||| ||| ||| || || || || | ||| |||||| Sbjct 47191826 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAA 47191767 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || ||||| | ||||| | || | || |||||||| Sbjct 47191766 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 47191707 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||| |||||||| || | || || || ||| | || || ||||||| Sbjct 47191706 ATACAGAAAGAATCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCA 47191658 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||| || || |||| || |||||||||||| |||| |||| | Sbjct 17087633 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAAAGCTC 17087692 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || ||| ||| ||||| || ||| | || ||||| Sbjct 17087693 TGATACAATTGATAATGTGAAGACAAAGATTCAAGACAAGGAGGGCATCCCACCAGATCA 17087752 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || |||||||||| ||| || || |||||||||||| | || |||| || || || Sbjct 17087753 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAA 17087812 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || |||||||| || || ||| | || | || || || |||||| Sbjct 17087813 CATTCAGAAAGAATCCACCCTTCATCTTGTCCTTCGCCTTCGTGGTGGC 17087861 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||| || || |||| || || ||||||||| ||||| || Sbjct 47183958 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAAGTAGAGAGTTC 47183899 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || ||| ||| ||| ||||| || ||| |||| ||||| Sbjct 47183898 TGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCA 47183839 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||||||||||||| ||| || ||||||||||||||| | || |||| || || || Sbjct 47183838 GCAAAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 47183779 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || ||||| || || || | || | || || ||||||||| Sbjct 47183778 CATTCAGAAGGAATCCACCCTCCACCTTGTCCTTCGCCTTCGCGGTGGC 47183730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| || |||| || |||||||||||| |||| ||| Sbjct 47179831 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACCATTACCTTGGAGGTTGAAAGTTCT 47179772 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | ||||| || || |||||||| || |||| || || Sbjct 47179771 GATACTATTGATAATGTAAAGGCTAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 47179712 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||||||||| | ||| || || || | |||||| || | || |||||||| Sbjct 47179711 CAAAGGCTTATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGTACCCTTGCTGATTATAAC 47179652 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || ||||| |||||| | || || ||||| Sbjct 47179651 ATCCAGAAGGAATCCACTCTTCATTTGGTGTTGAGGCTTCGTGGTGG 47179605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||| || || |||| || || ||||||||| |||| || | || Sbjct 48398580 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGA---GGTAGAGAG 48398524 Query 111159 C---GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111215 | ||| | ||| | || ||| ||||||| ||||| || ||| |||| || Sbjct 48398523 CTCTGATACAATTGATAATGTGAAAGCAAAAATTCAAGACAAGGAGGGCATTCCACCAGA 48398464 Query 111216 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111275 ||| || |||||||||| ||| || ||||||||||||||| | || |||| || || Sbjct 48398463 TCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTA 48398404 Query 111276 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || || || || || || || | || | || || ||||||||| Sbjct 48398403 CAACATTCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTTCGCGGTGGC 48398352 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| || ||||| || || ||||| ||| ||||| ||| Sbjct 17087178 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 17087237 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || ||| ||| ||| || || || || | ||| ||||| Sbjct 17087238 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAG 17087297 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || ||||| | ||||| | || | || |||||||| Sbjct 17087298 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 17087357 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||| || ||||| || | || || || ||| | || || ||||||| Sbjct 17087358 ATACAGAAGGAATCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCA 17087406 >seq591 Length=869021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||| || || |||| || |||||||||||| | || |||| | Sbjct 242956 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTAGAGGTGGAAAGCTC 242897 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || ||| ||| ||||| || ||| | || ||||| Sbjct 242896 TGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATCCCACCAGATCA 242837 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || |||||||||| ||| || || |||||||||||| | || |||| ||||| || Sbjct 242836 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACCTTGGCAGATTACAA 242777 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || |||||||| || || || | || | || || || |||||| Sbjct 242776 CATTCAGAAAGAATCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGC 242728 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| || ||||| || |||||||| ||| ||||| ||| Sbjct 243411 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAAACCATAACCTTGGAAGTGGAGAGTTCA 243352 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || ||| || ||| || || || || | ||| ||||| Sbjct 243351 GATACAATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAG 243292 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || ||||| | ||||| | || | || |||||||| Sbjct 243291 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 243232 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||| || ||||| || | || || || ||| | || || ||||||| Sbjct 243231 ATACAGAAGGAATCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCA 243183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421798353080824