Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq222699 147 2e-30
seq205188 104 2e-17
>seq222699
Length=2956
Score = 147 bits (162), Expect = 2e-30
Identities = 563/870 (65%), Gaps = 17/870 (2%)
Strand=Plus/Minus
Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735
|| || || | |||||| ||||| || |||||||||||||||| ||||||||| ||||
Sbjct 957 TGATAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTGCCCTGGAGAGATATAAGCTCC 898
Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795
|| | ||||| ||||| | | | | || | | || || | | | ||
Sbjct 897 ATCCAGTCAAAGGGATTCTGAACACCGTACACCTTCCCGCATCCAAGCGCACCCAGCAAC 838
Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855
| ||||| ||||| || |||||||| | ||||| || | |||||| || | | |||
Sbjct 837 CGGTCCGCAACAAACTCAATATATTGACTCATTAGCTCCCCGTTCATCCCCACCA-ACGC 779
Query 16856 ACCGG-AAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914
|| || ||| || || || ||| | |||||| |||||||||| | |||
Sbjct 778 ACAGGGAAGCGCGTCGCACACAAACTCTCTCTCTATGTCAACCGCTTCGCGCACAATCTC 719
Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974
|| || || |||| | | | || | ||| || || ||||| ||
Sbjct 718 CTTCACGCGCTCGTCGGTGAGCTTCCTCCTGAGGAGAGAGTACAAGAGGCACGCGAAGTC 659
Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATC 17032
||| || | || || |||| || |||| |||||||| || || || | |||||||||
Sbjct 658 GCAGTGAAGCCCTTCATCTC-GC-GATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATC 601
Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092
|| || ||||||| ||||||||||| | ||| || || ||||| || ||||||
Sbjct 600 AAGCCGCGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCG 541
Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152
||| | || || |||| | || ||||| | | ||| || | ||||| |
Sbjct 540 ACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGA---GTCGGTGGCATCGATCCAGCGC 484
Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212
|||| | ||| || | | || || || |||| ||| || | |
Sbjct 483 AAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAACAGGTGA 424
Query 17213 TCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271
| ||||| || | ||| | || || || || | ||| || |||||||| ||||||||
Sbjct 423 TTCTTTTCG-GTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTCGGAGTG 365
Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAACTT 17330
|||||||| ||||| ||||| || ||||| |||||| ||||| || || ||| | ||
Sbjct 364 GATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCA-CGGGCCTCGGCGGCTTGGATTT 306
Query 17331 CCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACG 17390
|| ||| || | || || |||||| |||||||||||| ||||| || || |
Sbjct 305 CCTTCATGAAGCGGGCGGCGAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAAGAAGG 246
Query 17391 CCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACGCGCCAGTCCTTTAA 17448
| | | || | ||||| || ||| | ||||| || | ||||| |
Sbjct 245 CGAGGACGTGGGTGATGAAGTAGCGCTCGCCGTCGGTG--AGGGAGTCCCAGTGGCGGAG 188
Query 17449 ATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACAT 17508
|||| ||| | ||| || ||||||| |||||| ||| || | || || || |||||
Sbjct 187 GTCTTGGGAAAGATCAACCTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTTGTACAT 128
Query 17509 ATTCCAAATATCATTGTATTGTATGGGGAA 17538
| |||||| | |||||| || |||||
Sbjct 127 TTCCCAAATTTGGGGGTATTGGATTGGGAA 98
>seq205188
Length=846
Score = 104 bits (114), Expect = 2e-17
Identities = 121/161 (75%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291
|||| || || |||| ||| ||||||||||| |||||||| |||||||| ||||| ||||
Sbjct 251 TTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCT 310
Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCT 17350
| || ||||||||| ||||| || | | || || ||| | || || || | ||
Sbjct 311 GGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCATA-AAACGGCCGGCG 369
Query 17351 AGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391
|| |||||| |||||||||||| |||||||| || ||
Sbjct 370 AGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGC 410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516096245893800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |