Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq222699 147 2e-30 seq205188 104 2e-17 >seq222699 Length=2956 Score = 147 bits (162), Expect = 2e-30 Identities = 563/870 (65%), Gaps = 17/870 (2%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | |||||| ||||| || |||||||||||||||| ||||||||| |||| Sbjct 957 TGATAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTGCCCTGGAGAGATATAAGCTCC 898 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || | ||||| ||||| | | | | || | | || || | | | || Sbjct 897 ATCCAGTCAAAGGGATTCTGAACACCGTACACCTTCCCGCATCCAAGCGCACCCAGCAAC 838 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 | ||||| ||||| || |||||||| | ||||| || | |||||| || | | ||| Sbjct 837 CGGTCCGCAACAAACTCAATATATTGACTCATTAGCTCCCCGTTCATCCCCACCA-ACGC 779 Query 16856 ACCGG-AAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 || || ||| || || || ||| | |||||| |||||||||| | ||| Sbjct 778 ACAGGGAAGCGCGTCGCACACAAACTCTCTCTCTATGTCAACCGCTTCGCGCACAATCTC 719 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 || || || |||| | | | || | ||| || || ||||| || Sbjct 718 CTTCACGCGCTCGTCGGTGAGCTTCCTCCTGAGGAGAGAGTACAAGAGGCACGCGAAGTC 659 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 ||| || | || || |||| || |||| |||||||| || || || | ||||||||| Sbjct 658 GCAGTGAAGCCCTTCATCTC-GC-GATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATC 601 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || || ||||||| ||||||||||| | ||| || || ||||| || |||||| Sbjct 600 AAGCCGCGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCG 541 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 ||| | || || |||| | || ||||| | | ||| || | ||||| | Sbjct 540 ACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGA---GTCGGTGGCATCGATCCAGCGC 484 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 |||| | ||| || | | || || || |||| ||| || | | Sbjct 483 AAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAACAGGTGA 424 Query 17213 TCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 | ||||| || | ||| | || || || || | ||| || |||||||| |||||||| Sbjct 423 TTCTTTTCG-GTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTCGGAGTG 365 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAACTT 17330 |||||||| ||||| ||||| || ||||| |||||| ||||| || || ||| | || Sbjct 364 GATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCA-CGGGCCTCGGCGGCTTGGATTT 306 Query 17331 CCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACG 17390 || ||| || | || || |||||| |||||||||||| ||||| || || | Sbjct 305 CCTTCATGAAGCGGGCGGCGAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAAGAAGG 246 Query 17391 CCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACGCGCCAGTCCTTTAA 17448 | | | || | ||||| || ||| | ||||| || | ||||| | Sbjct 245 CGAGGACGTGGGTGATGAAGTAGCGCTCGCCGTCGGTG--AGGGAGTCCCAGTGGCGGAG 188 Query 17449 ATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACAT 17508 |||| ||| | ||| || ||||||| |||||| ||| || | || || || ||||| Sbjct 187 GTCTTGGGAAAGATCAACCTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTTGTACAT 128 Query 17509 ATTCCAAATATCATTGTATTGTATGGGGAA 17538 | |||||| | |||||| || ||||| Sbjct 127 TTCCCAAATTTGGGGGTATTGGATTGGGAA 98 >seq205188 Length=846 Score = 104 bits (114), Expect = 2e-17 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291 |||| || || |||| ||| ||||||||||| |||||||| |||||||| ||||| |||| Sbjct 251 TTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCT 310 Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCT 17350 | || ||||||||| ||||| || | | || || ||| | || || || | || Sbjct 311 GGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCATA-AAACGGCCGGCG 369 Query 17351 AGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || |||||| |||||||||||| |||||||| || || Sbjct 370 AGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGC 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516096245893800