Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq222699 116 4e-21 seq15189 87.8 2e-12 >seq222699 Length=2956 Score = 116 bits (128), Expect = 4e-21 Identities = 239/353 (68%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || || || |||| || | ||||||||| || ||||| Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| | ||| ||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 551 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 ||||| || || || ||||| | || | || || | | || || ||| || Sbjct 550 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| ||||| | ||||||||| ||||| || || || |||| || || Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 || | || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 || || ||||| || ||||| || || || ||||||||| | ||||||| Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGG 318 >seq15189 Length=5727 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 |||||||||||| | || |||| | ||||| || || |||||| || |||| || Sbjct 2543 TTCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACC 2484 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| ||||| || || | ||| ||||| | || | || |||| || |||||| Sbjct 2483 CGGAGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAA 2424 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 ||||||||| | ||||||||| ||| ||||||| | | ||||||||| Sbjct 2423 GAGATCAGGCACCCAAAGAGCATAAAACAGATCTCGCGCACGATGTTCCTC 2373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592058919766800