Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq39107 87.8 1e-12 seq158136 84.2 2e-11 >seq39107 Length=55737 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| ||||| ||||| ||| ||| ||| | | Sbjct 40934 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTAGAATCGTCT 40993 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || ||||| ||| | || |||||| Sbjct 40994 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAA 41053 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || |||||| | || ||| | ||| | |||||||||||| Sbjct 41054 CAAAGGTTAATTTTTGCTGGTAAACAACTCGAGGATGGGAGAACCCTTGCCGATTACAAT 41113 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 ||||| ||||| || || || ||| ||||| | || || Sbjct 41114 ATTCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGTTT 41151 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || || ||||| || ||| ||| | Sbjct 43770 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 43829 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || | || ||| ||| ||||| || ||| | ||| |||||| Sbjct 43830 AGATACAATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGATCA 43889 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || ||||| | |||||| | ||| | || |||||||| Sbjct 43890 GCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAA 43949 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || || || |||||||| || ||| |||| || Sbjct 43950 CATCCAGAAAGAATCTACCCTGCACCTGGTTTT 43982 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||| || ||||||||||| || || |||||||||||| || |||| || Sbjct 17121 GATCAACAGAGGCTTATCTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGAC 17180 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||||| ||||||||||| || ||| Sbjct 17181 TACAATATTCAGAAGGAATCTACCCTGCAC 17210 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || || ||||| || ||| ||| | Sbjct 48780 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 48839 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || | || ||| ||| ||||| || ||| | ||| |||||| Sbjct 48840 AGATACAATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGATCA 48899 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || ||||| | |||||| | || | || |||||||| Sbjct 48900 GCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCGGATTACAA 48959 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || || || |||||||| || ||| |||| || Sbjct 48960 CATCCAGAAAGAATCTACCCTGCACCTGGTTTT 48992 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || || ||||| || ||| ||| | Sbjct 50043 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 50102 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || | || ||| ||| ||||| || ||| | ||| |||||| Sbjct 50103 AGATACAATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGATCA 50162 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || ||||| | |||||| | || | || |||||||| Sbjct 50163 GCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCGGATTACAA 50222 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || || || |||||||| || ||| |||| || Sbjct 50223 CATCCAGAAAGAATCTACCCTGCACCTGGTTTT 50255 >seq158136 Length=352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || ||||||||||| || || || || ||| |||| | | Sbjct 20 AATGCAAATCTTTGTGAAGACATTGACGGGAAAGACAATCACTCTTGAAGTGGAAAGCTC 79 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || ||||| || ||| || ||||| ||| | || ||| || Sbjct 80 TGACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 139 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| || || ||||| || ||||| | || ||| | ||| | ||||||||||| Sbjct 140 GCAAAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGAACCCTTGCCGATTACAA 199 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| || || ||||| || || ||||| Sbjct 200 CATTCAGAAAGAGTCTACCCTGCATTTGGTG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409675149505490