Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq39107 87.8 1e-12
seq158136 84.2 2e-11
>seq39107
Length=55737
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || || | ||||| ||||| ||||| ||||| ||| ||| ||| | |
Sbjct 40934 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTAGAATCGTCT 40993
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || ||||| || || || ||||| ||| | || ||||||
Sbjct 40994 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAA 41053
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||| | || ||||| || |||||| | || ||| | ||| | ||||||||||||
Sbjct 41054 CAAAGGTTAATTTTTGCTGGTAAACAACTCGAGGATGGGAGAACCCTTGCCGATTACAAT 41113
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252
||||| ||||| || || || ||| ||||| | || ||
Sbjct 41114 ATTCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGTTT 41151
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
||||||||| || | || || ||||| || || ||||| || ||| ||| |
Sbjct 43770 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 43829
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
||| || | | | || | || ||| ||| ||||| || ||| | ||| ||||||
Sbjct 43830 AGATACAATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGATCA 43889
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
|| || ||||||||||| || ||||| | |||||| | ||| | || ||||||||
Sbjct 43890 GCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAA 43949
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|| || || |||||||| || ||| |||| ||
Sbjct 43950 CATCCAGAAAGAATCTACCCTGCACCTGGTTTT 43982
Score = 82.4 bits (90), Expect = 6e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208
|||||||| || ||||||||||| || || |||||||||||| || |||| ||
Sbjct 17121 GATCAACAGAGGCTTATCTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGAC 17180
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCAC 25238
||||||||||| ||||||||||| || |||
Sbjct 17181 TACAATATTCAGAAGGAATCTACCCTGCAC 17210
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
||||||||| || | || || ||||| || || ||||| || ||| ||| |
Sbjct 48780 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 48839
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
||| || | | | || | || ||| ||| ||||| || ||| | ||| ||||||
Sbjct 48840 AGATACAATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGATCA 48899
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
|| || ||||||||||| || ||||| | |||||| | || | || ||||||||
Sbjct 48900 GCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCGGATTACAA 48959
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|| || || |||||||| || ||| |||| ||
Sbjct 48960 CATCCAGAAAGAATCTACCCTGCACCTGGTTTT 48992
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
||||||||| || | || || ||||| || || ||||| || ||| ||| |
Sbjct 50043 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 50102
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
||| || | | | || | || ||| ||| ||||| || ||| | ||| ||||||
Sbjct 50103 AGATACAATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGATCA 50162
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
|| || ||||||||||| || ||||| | |||||| | || | || ||||||||
Sbjct 50163 GCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCGGATTACAA 50222
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|| || || |||||||| || ||| |||| ||
Sbjct 50223 CATCCAGAAAGAATCTACCCTGCACCTGGTTTT 50255
>seq158136
Length=352
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
||||||||| || | || ||||||||||| || || || || ||| |||| | |
Sbjct 20 AATGCAAATCTTTGTGAAGACATTGACGGGAAAGACAATCACTCTTGAAGTGGAAAGCTC 79
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
|| || | | | || ||||| || ||| || ||||| ||| | || ||| ||
Sbjct 80 TGACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 139
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
||||| || || ||||| || ||||| | || ||| | ||| | |||||||||||
Sbjct 140 GCAAAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGAACCCTTGCCGATTACAA 199
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244
||||| || || ||||| || || |||||
Sbjct 200 CATTCAGAAAGAGTCTACCCTGCATTTGGTG 230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409675149505490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |