Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq95677 86.0 9e-12
seq39107 86.0 9e-12
>seq95677
Length=6839
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| || || || || || ||||| || | || ||||| || ||| ||||||||
Sbjct 696 GTTCCTCCCCTGAGCCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGTATGTTATAATCA 637
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||| || | | ||| || | ||| || |||||||||||||| || ||||| || |||
Sbjct 636 GCAAGTGTGCGACCATCTTCGAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGA 577
Query 146168 GGAATTCCTTCTTTATC 146184
|| || ||||| || ||
Sbjct 576 GGGATACCTTCCTTGTC 560
>seq39107
Length=55737
Score = 86.0 bits (94), Expect = 9e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
||||| ||||| | ||| ||||| | ||| || | |||||| ||||||||||| || |||
Sbjct 41115 ATATTGTAATCGGCAAGGGTTCTCCCATCCTCGAGTTGTTTACCAGCAAAAATTAACCTT 41056
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|| ||||||||||| || || ||||| || ||
Sbjct 41055 TGTTGATCCGGAGGGATACCCTCTTTGTCCTG 41024
Score = 84.2 bits (92), Expect = 3e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127
||||| || | || || || ||| || || || ||||| | ||| ||||| | || ||
Sbjct 26305 ACCAAGTGGAGCGTGGACTCCTTTTGA-ATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 26247
Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| |||||| ||||| |||||||| || |||||||||||||| || |||||||| || ||
Sbjct 26246 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 26187
Score = 84.2 bits (92), Expect = 3e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127
||||| || | || || || ||| || || || ||||| | ||| ||||| | || ||
Sbjct 29628 ACCAAGTGGAGCGTGGACTCCTTTTGA-ATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 29570
Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| |||||| ||||| |||||||| || |||||||||||||| || |||||||| || ||
Sbjct 29569 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 29510
Score = 84.2 bits (92), Expect = 3e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127
||||| || | || || || ||| || || || ||||| | ||| ||||| | || ||
Sbjct 46559 ACCAAGTGGAGCGTGGACTCCTTTTGA-ATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 46501
Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| |||||| ||||| |||||||| || |||||||||||||| || |||||||| || ||
Sbjct 46500 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 46441
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| | ||| || || ||||| || | ||||||||||| || |||||||| |
Sbjct 46807 TTCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCG 46748
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||| ||||| | ||| || | ||||| || ||||| || | || ||||| || || |
Sbjct 46747 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGG 46688
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||| || || ||||| ||
Sbjct 46687 GAATACCCTCCTTATCCTG 46669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741444200787200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |