Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq95677 86.0 9e-12 seq39107 86.0 9e-12 >seq95677 Length=6839 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || ||||| || | || ||||| || ||| |||||||| Sbjct 696 GTTCCTCCCCTGAGCCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGTATGTTATAATCA 637 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| || | | ||| || | ||| || |||||||||||||| || ||||| || ||| Sbjct 636 GCAAGTGTGCGACCATCTTCGAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGA 577 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||| || || Sbjct 576 GGGATACCTTCCTTGTC 560 >seq39107 Length=55737 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||| ||||| | ||| || | |||||| ||||||||||| || ||| Sbjct 41115 ATATTGTAATCGGCAAGGGTTCTCCCATCCTCGAGTTGTTTACCAGCAAAAATTAACCTT 41056 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || ||||| || || Sbjct 41055 TGTTGATCCGGAGGGATACCCTCTTTGTCCTG 41024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | || || || ||| || || || ||||| | ||| ||||| | || || Sbjct 26305 ACCAAGTGGAGCGTGGACTCCTTTTGA-ATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 26247 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| ||||| |||||||| || |||||||||||||| || |||||||| || || Sbjct 26246 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 26187 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | || || || ||| || || || ||||| | ||| ||||| | || || Sbjct 29628 ACCAAGTGGAGCGTGGACTCCTTTTGA-ATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 29570 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| ||||| |||||||| || |||||||||||||| || |||||||| || || Sbjct 29569 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 29510 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | || || || ||| || || || ||||| | ||| ||||| | || || Sbjct 46559 ACCAAGTGGAGCGTGGACTCCTTTTGA-ATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 46501 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| ||||| |||||||| || |||||||||||||| || |||||||| || || Sbjct 46500 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 46441 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| || || ||||| || | ||||||||||| || |||||||| | Sbjct 46807 TTCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCG 46748 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| ||||| | ||| || | ||||| || ||||| || | || ||||| || || | Sbjct 46747 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGG 46688 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || || ||||| || Sbjct 46687 GAATACCCTCCTTATCCTG 46669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741444200787200