Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq39107 91.5 9e-14 seq52342 82.4 5e-11 >seq39107 Length=55737 Score = 91.5 bits (100), Expect = 9e-14 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | || || ||||| | || ||| ||||| ||||||||||| Sbjct 27011 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 26952 Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277 | | || || || | || ||||| || || || || ||||| |||| |||||| || Sbjct 26951 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTG 26893 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336 || | || ||||||||| ||| |||||||| | || | || | ||| | Sbjct 26892 GTGGAATGCCCTCCTTGTCCTGAATC-TTTGCTTTCACATTATCAATTGTATCAGAGCTC 26834 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| || ||||| || || || ||||| |||||||| |||||||| Sbjct 26833 TCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 26781 Score = 91.5 bits (100), Expect = 9e-14 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | || || ||||| | || ||| ||||| ||||||||||| Sbjct 30334 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 30275 Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277 | | || || || | || ||||| || || || || ||||| |||| |||||| || Sbjct 30274 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTG 30216 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336 || | || ||||||||| ||| |||||||| | || | || | ||| | Sbjct 30215 GTGGAATGCCCTCCTTGTCTTGAATC-TTTGCTTTCACATTATCAATTGTATCAGAGCTC 30157 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| || ||||| || || || ||||| |||||||| |||||||| Sbjct 30156 TCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 30104 Score = 91.5 bits (100), Expect = 9e-14 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | || || ||||| | || ||| ||||| ||||||||||| Sbjct 41848 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 41789 Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277 | | || || || | || ||||| || || || || ||||| |||| |||||| || Sbjct 41788 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTG 41730 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336 || | || ||||||||| ||| |||||||| | || | || | ||| | Sbjct 41729 GTGGAATGCCCTCCTTGTCCTGAATC-TTTGCTTTCACATTATCAATTGTATCAGAGCTC 41671 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| || ||||| || || || ||||| |||||||| |||||||| Sbjct 41670 TCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 41618 >seq52342 Length=11406 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || || | || |||| |||||| || ||||| Sbjct 9996 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTTCCAGCGAA 10055 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| ||| | | ||||| || ||||| ||| | | Sbjct 10056 GATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 10115 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| ||||| || | |||||||| || ||||| || || || || Sbjct 10116 GTCAATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAAC 10175 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 10176 GAAGATCTGCATC 10188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322189875629600