Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq39107 91.5 9e-14
seq52342 82.4 5e-11
>seq39107
Length=55737
Score = 91.5 bits (100), Expect = 9e-14
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218
||| || ||||| || | || || ||||| | || ||| ||||| |||||||||||
Sbjct 27011 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 26952
Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277
| | || || || | || ||||| || || || || ||||| |||| |||||| ||
Sbjct 26951 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTG 26893
Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336
|| | || ||||||||| ||| |||||||| | || | || | ||| |
Sbjct 26892 GTGGAATGCCCTCCTTGTCCTGAATC-TTTGCTTTCACATTATCAATTGTATCAGAGCTC 26834
Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || |||| || ||||| || || || ||||| |||||||| ||||||||
Sbjct 26833 TCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 26781
Score = 91.5 bits (100), Expect = 9e-14
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218
||| || ||||| || | || || ||||| | || ||| ||||| |||||||||||
Sbjct 30334 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 30275
Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277
| | || || || | || ||||| || || || || ||||| |||| |||||| ||
Sbjct 30274 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTG 30216
Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336
|| | || ||||||||| ||| |||||||| | || | || | ||| |
Sbjct 30215 GTGGAATGCCCTCCTTGTCTTGAATC-TTTGCTTTCACATTATCAATTGTATCAGAGCTC 30157
Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || |||| || ||||| || || || ||||| |||||||| ||||||||
Sbjct 30156 TCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 30104
Score = 91.5 bits (100), Expect = 9e-14
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218
||| || ||||| || | || || ||||| | || ||| ||||| |||||||||||
Sbjct 41848 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 41789
Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277
| | || || || | || ||||| || || || || ||||| |||| |||||| ||
Sbjct 41788 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTG 41730
Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336
|| | || ||||||||| ||| |||||||| | || | || | ||| |
Sbjct 41729 GTGGAATGCCCTCCTTGTCCTGAATC-TTTGCTTTCACATTATCAATTGTATCAGAGCTC 41671
Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || |||| || ||||| || || || ||||| |||||||| ||||||||
Sbjct 41670 TCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 41618
>seq52342
Length=11406
Score = 82.4 bits (90), Expect = 5e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| || || | || |||| |||||| || |||||
Sbjct 9996 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTTCCAGCGAA 10055
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||||| || |||||||| ||| | | ||||| || ||||| ||| | |
Sbjct 10056 GATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 10115
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | || | |||| ||||| || | |||||||| || ||||| || || || ||
Sbjct 10116 GTCAATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAAC 10175
Query 34378 AAAGATCTGCATC 34390
||||||||||||
Sbjct 10176 GAAGATCTGCATC 10188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322189875629600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |