Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq51459 105 5e-18 seq91905 89.7 4e-13 >seq51459 Length=25718 Score = 105 bits (116), Expect = 5e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || |||||||| || | | ||||| ||||||||||||||||| ||||| || || ||| Sbjct 12167 CAGTTTTACGTAGCAAGTGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATG 12226 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || || || ||||||||| |||||| || || || | |||||||| ||| Sbjct 12227 GGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 12286 Query 20551 GTT 20553 ||| Sbjct 12287 GTT 12289 >seq91905 Length=5598 Score = 89.7 bits (98), Expect = 4e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 || || || |||||||||||||| ||||| || || ||||| ||||| |||| || ||| Sbjct 4028 GAGTTATCATGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGCATTCCATTTAAT 4087 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 |||||| |||||| || || || | |||||||| |||||| Sbjct 4088 ATTGCATCTTATGCCCTTCTGACATGCATGATTGCTCATGTT 4129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398094057403075