Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq88322 100 6e-16 seq65218 91.5 3e-13 >seq88322 Length=2502 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| ||| ||| ||| | || || || || || |||| |||| |||||||| | Sbjct 659 TGGACAGCGAGATAATCTATGACAGGGACTTCGACTATGATTATTTTGGGTTCAAAACCC 718 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| || || ||| | || || | || ||| | |||||| | || ||||||| Sbjct 719 TTGAGAGGTCTTACCTCTTGAAGGTTCAAGGGAAGGTTGTGGAAAGGCCGCAACACATGT 778 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGA 248942 ||||| |||| || || ||||||||||||||||||||||| Sbjct 779 TGATGAGAGTCGCGGTTGGGATTCACAAGGATGACATAGA 818 >seq65218 Length=5182 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| |||| | ||||| |||||||||||||| ||||| || ||||||| ||||| Sbjct 118 GTACTCCCCCACGCGCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGGGAAATCAGCTCCAT 59 Query 157318 CCACTCGAATGGGTTG-GCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 ||| ||||| ||||| || || ||||||||||| || |||| ||| Sbjct 58 CCAATCGAACGGGTTCTGCACA-TTGTACACCTTCCCGCACCCAAGC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070684208914880