Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq39107 93.3 3e-14
>seq39107
Length=55737
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || || | |||| ||| || || |||||||| || |||||||| || ||
Sbjct 43998 TCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCCGC 43939
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | |||||| | ||||| || ||| ||||||| || || ||||| |||
Sbjct 43938 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGG 43879
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276
| || |||||||| ||| | |||||| | || ||| || || |||
Sbjct 43878 GATACCCTCCTTATCCTGAATCT-TTGCTTTCACATTGTCAATTGTATCTGAACTCTCCA 43820
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | || ||| | || || ||||| || ||||||||||||||||||
Sbjct 43819 CTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 43770
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||| || || ||||| || |||||||||||||| |||
Sbjct 27007 CCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 26948
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||||||||| || ||| | ||||| || || ||||| ||
Sbjct 26947 AAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGA 26888
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| ||||| || ||| | |||| || || | ||| || ||| | |||
Sbjct 26887 ATGCCCTCCTTGTCCTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 26829
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | ||| ||| | || || |||| || || ||||| || ||||||
Sbjct 26828 CTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCATT 26780
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||| || || ||||| || |||||||||||||| |||
Sbjct 30330 CCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 30271
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||||||||| || ||| | ||||| || || ||||| ||
Sbjct 30270 AAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGA 30211
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| ||||| || ||| | |||| || || | ||| || ||| | |||
Sbjct 30210 ATGCCCTCCTTGTCTTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 30152
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | ||| ||| | || || |||| || || ||||| || ||||||
Sbjct 30151 CTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCATT 30103
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||| || || ||||| || |||||||||||||| |||
Sbjct 41844 CCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 41785
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||||||||| || ||| | ||||| || || ||||| ||
Sbjct 41784 AAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGA 41725
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| ||||| || ||| | |||| || || | ||| || ||| | |||
Sbjct 41724 ATGCCCTCCTTGTCCTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 41666
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | ||| ||| | || || |||| || || ||||| || ||||||
Sbjct 41665 CTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCATT 41617
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||| || || ||||| || ||||| |||||||| |||
Sbjct 17233 CCACCGCGAAGGCGAAGGACAAGGTGCAGGGTAGATTCCTTCTGAATATTGTAGTCTGCC 17174
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || |||||||||||| || || ||| ||||||| || |||||||| ||
Sbjct 17173 AAGGTACGACCATCTTCCAATTGCTTCCCGGCAAAGATAAGCCTCTGTTGATCAGGTGGG 17114
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || ||||| || ||| | |||| || || | ||| || ||| | |||
Sbjct 17113 ATTCCCTCCTTGTCCTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 17055
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||| ||| | || || |||| || || ||||| ||||||||
Sbjct 17054 CTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATTTGCAT 17007
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||| || || || || || ||||| ||||| ||||| | ||| | | |||
Sbjct 41146 AAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATC 41087
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| | |||||| || ||| | || | |||||||||||| || | || || || ||
Sbjct 41086 CTCGAGTTGTTTACCAGCAAAAATTAACCTTTGTTGATCCGGAGGGATACCCTCTTTGTC 41027
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | |||||| | ||| |||||| | || ||||| ||||||| |
Sbjct 41026 CTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTGATGGT 40967
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| ||||| ||||| ||||| || |||||
Sbjct 40966 CTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || || | |||| ||| || || |||||||| || |||||||| || ||
Sbjct 49008 TCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCCGC 48949
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | | |||||| | ||||| || ||| ||||||| || || ||||| |||
Sbjct 48948 AAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGG 48889
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276
| || |||||||| ||| | |||||| | || ||| || || |||
Sbjct 48888 GATACCCTCCTTATCCTGAATCT-TTGCTTTCACATTGTCAATTGTATCTGAACTCTCCA 48830
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | || ||| | || || ||||| || ||||||||||||||||||
Sbjct 48829 CTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 48780
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || || | |||| ||| || || |||||||| || |||||||| || ||
Sbjct 50271 TCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCCGC 50212
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | | |||||| | ||||| || ||| ||||||| || || ||||| |||
Sbjct 50211 AAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGG 50152
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276
| || |||||||| ||| | |||||| | || ||| || || |||
Sbjct 50151 GATACCCTCCTTATCCTGAATCT-TTGCTTTCACATTGTCAATTGTATCTGAACTCTCCA 50093
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | || ||| | || || ||||| || ||||||||||||||||||
Sbjct 50092 CTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 50043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378308229066075
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |