Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq39107 93.3 3e-14 >seq39107 Length=55737 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || || | |||| ||| || || |||||||| || |||||||| || || Sbjct 43998 TCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCCGC 43939 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | ||||| || ||| ||||||| || || ||||| ||| Sbjct 43938 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGG 43879 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | || |||||||| ||| | |||||| | || ||| || || ||| Sbjct 43878 GATACCCTCCTTATCCTGAATCT-TTGCTTTCACATTGTCAATTGTATCTGAACTCTCCA 43820 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| | || || ||||| || |||||||||||||||||| Sbjct 43819 CTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 43770 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || ||||| || |||||||||||||| ||| Sbjct 27007 CCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 26948 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| | ||||| || || ||||| || Sbjct 26947 AAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGA 26888 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||| | |||| || || | ||| || ||| | ||| Sbjct 26887 ATGCCCTCCTTGTCCTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 26829 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| | || || |||| || || ||||| || |||||| Sbjct 26828 CTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCATT 26780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || ||||| || |||||||||||||| ||| Sbjct 30330 CCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 30271 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| | ||||| || || ||||| || Sbjct 30270 AAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGA 30211 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||| | |||| || || | ||| || ||| | ||| Sbjct 30210 ATGCCCTCCTTGTCTTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 30152 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| | || || |||| || || ||||| || |||||| Sbjct 30151 CTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCATT 30103 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || ||||| || |||||||||||||| ||| Sbjct 41844 CCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 41785 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| | ||||| || || ||||| || Sbjct 41784 AAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGA 41725 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||| | |||| || || | ||| || ||| | ||| Sbjct 41724 ATGCCCTCCTTGTCCTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 41666 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| | || || |||| || || ||||| || |||||| Sbjct 41665 CTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCATT 41617 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || ||||| || ||||| |||||||| ||| Sbjct 17233 CCACCGCGAAGGCGAAGGACAAGGTGCAGGGTAGATTCCTTCTGAATATTGTAGTCTGCC 17174 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||||||| || || ||| ||||||| || |||||||| || Sbjct 17173 AAGGTACGACCATCTTCCAATTGCTTCCCGGCAAAGATAAGCCTCTGTTGATCAGGTGGG 17114 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||| | |||| || || | ||| || ||| | ||| Sbjct 17113 ATTCCCTCCTTGTCCTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 17055 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| | || || |||| || || ||||| |||||||| Sbjct 17054 CTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATTTGCAT 17007 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || || || || ||||| ||||| ||||| | ||| | | ||| Sbjct 41146 AAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATC 41087 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | |||||| || ||| | || | |||||||||||| || | || || || || Sbjct 41086 CTCGAGTTGTTTACCAGCAAAAATTAACCTTTGTTGATCCGGAGGGATACCCTCTTTGTC 41027 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| |||||| | || ||||| ||||||| | Sbjct 41026 CTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTGATGGT 40967 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 40966 CTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || || | |||| ||| || || |||||||| || |||||||| || || Sbjct 49008 TCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCCGC 48949 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||| | ||||| || ||| ||||||| || || ||||| ||| Sbjct 48948 AAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGG 48889 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | || |||||||| ||| | |||||| | || ||| || || ||| Sbjct 48888 GATACCCTCCTTATCCTGAATCT-TTGCTTTCACATTGTCAATTGTATCTGAACTCTCCA 48830 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| | || || ||||| || |||||||||||||||||| Sbjct 48829 CTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 48780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || || | |||| ||| || || |||||||| || |||||||| || || Sbjct 50271 TCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCCGC 50212 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||| | ||||| || ||| ||||||| || || ||||| ||| Sbjct 50211 AAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGG 50152 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | || |||||||| ||| | |||||| | || ||| || || ||| Sbjct 50151 GATACCCTCCTTATCCTGAATCT-TTGCTTTCACATTGTCAATTGTATCTGAACTCTCCA 50093 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| | || || ||||| || |||||||||||||||||| Sbjct 50092 CTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 50043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378308229066075