Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq222699 116 5e-21 >seq222699 Length=2956 Score = 116 bits (128), Expect = 5e-21 Identities = 239/353 (68%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| || || || |||| || | ||||||||| || ||||| Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 |||||||| | ||| ||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 551 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 ||||| || || || ||||| | || | ||| || | | | || ||| || Sbjct 550 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| ||||| | ||||||||| ||||| || || || |||| || || Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 || | || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 || || ||||| || ||||| || || || ||||||||| | ||||||| Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGG 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656329628209400