Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq39107 109 5e-19 >seq39107 Length=55737 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || ||||| | ||| ||||| ||||||||||| ||||| | || || Sbjct 26314 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 26255 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || || ||||||||||| | |||| | |||||||| ||||| || |||||| Sbjct 26254 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 26195 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | || || | || |||||||| | ||| Sbjct 26194 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 26135 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || |||||||| ||||| ||||| |||||||| Sbjct 26134 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || ||||| | ||| ||||| ||||||||||| ||||| | || || Sbjct 29637 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 29578 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || || ||||||||||| | |||| | |||||||| ||||| || |||||| Sbjct 29577 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 29518 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | || || | || |||||||| | ||| Sbjct 29517 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 29458 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || |||||||| ||||| ||||| |||||||| Sbjct 29457 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || ||||| | ||| ||||| ||||||||||| ||||| | || || Sbjct 46568 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 46509 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || || ||||||||||| | |||| | |||||||| ||||| || |||||| Sbjct 46508 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 46449 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | || || | || |||||||| | ||| Sbjct 46448 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 46389 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || |||||||| ||||| ||||| |||||||| Sbjct 46388 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || ||||| | ||| ||||| || ||||| || |||||| | || ||| Sbjct 41151 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTC 41092 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || ||||| |||||||||||| | || | | ||| ||||| ||||| || || ||| Sbjct 41091 CCATCCTCGAGTTGTTTACCAGCAAAAATTAACCTTTGTTGATCCGGAGGGATACCCTCT 41032 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | ||||| | | || || |||| ||| Sbjct 41031 TTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTG 40972 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||||| ||||| ||||| || || || ||||| Sbjct 40971 ATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | ||||| ||||| || ||||||||||| | || || || Sbjct 16763 CAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGCAAGGGTTCTTCCATC 16704 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| |||| || | ||||| || || || || || || || || Sbjct 16703 TTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATC 16644 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | |||| | | || | || || | ||||||||| | ||| | | Sbjct 16643 -CTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATAG 16585 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || |||||||| || || || || |||||||| Sbjct 16584 TTTTCCCGGTCAAAGTCTTCACAAAGATTTGCAT 16551 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | ||||| ||||| || ||||||||||| | || || || Sbjct 26537 CAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGCAAGGGTTCTTCCATC 26478 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| |||| || | ||||| || || || || || || || || Sbjct 26477 TTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATC 26418 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | |||| | | || | || || | ||||||||| | ||| | | Sbjct 26417 -CTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATAG 26359 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || |||||||| || || || || |||||||| Sbjct 26358 TTTTCCCGGTCAAAGTCTTCACAAAGATTTGCAT 26325 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | ||||| ||||| || ||||||||||| | || || || Sbjct 29860 CAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGCAAGGGTTCTTCCATC 29801 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| |||| || | ||||| || || || || || || || || Sbjct 29800 TTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATC 29741 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | |||| | | || | || || | ||||||||| | ||| | | Sbjct 29740 -CTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATAG 29682 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || |||||||| || || || || |||||||| Sbjct 29681 TTTTCCCGGTCAAAGTCTTCACAAAGATTTGCAT 29648 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | ||||| ||||| || ||||||||||| | || || || Sbjct 46791 CAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGCAAGGGTTCTTCCATC 46732 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| |||| || | ||||| || || || || || || || || Sbjct 46731 TTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATC 46672 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | |||| | | || | || || | ||||||||| | ||| | | Sbjct 46671 -CTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATAG 46613 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || |||||||| || || || || |||||||| Sbjct 46612 TTTTCCCGGTCAAAGTCTTCACAAAGATTTGCAT 46579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494674803772000