Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq205188 165 1e-35
seq222699 143 4e-29
>seq205188
Length=846
Score = 165 bits (182), Expect = 1e-35
Identities = 377/563 (67%), Gaps = 6/563 (1%)
Strand=Plus/Plus
Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034
|| ||||||||||| | || ||||||||||| || |||||||| ||||| |||||
Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60
Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCCAGAAAAGAAGATTCCTTCTACTGC 50093
|| || || ||||| || ||||| ||||| | || || ||||||||||| || ||
Sbjct 61 CGTTTCTTGAGCCAGAAGATGGA-GCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCA 119
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCA 50153
|||||| || || | | ||| | | | || | ||||| | |||||
Sbjct 120 GGCAAATGCGACGATGCGCTCGGCGAAGGAGTCGGAAGAGTCGATCCAGCGGAGGGCCCA 179
Query 50154 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 50213
| ||||||||| | ||||| || || || || ||||| | ||||||| | |||| ||
Sbjct 180 GTTGGCCTTCTTGGTGACACAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCTC 239
Query 50214 ATTAC--TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271
||| ||||| | || || |||| | || || ||||| || || ||||||||
Sbjct 240 --TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTC 297
Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331
|| ||||| ||||| || ||||| || | ||||||| | ||| || || | |
Sbjct 298 TCGATGGCGATCTGGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCATA 357
Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391
|| || | || | ||||| || || ||||| ||| || || || || | ||
Sbjct 358 AAACGGCCGGCGAGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGGACG 417
Query 50392 TGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 50451
|| | || ||||| ||| | || || | ||||||| |||| || | |||
Sbjct 418 TGGGTGATGAAATGGCGCTCGCCGTCGGTGAGAGTGTTCCAATGGCTGATGTCCTGAGAG 477
Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 50511
| ||| || || ||| | ||||| || || || ||||| || || ||||| | ||||||
Sbjct 478 AGATCGACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTGTACATTTCCCAGATT 537
Query 50512 TCATGATATTGGATTGGGAAAAT 50534
| | |||||||| ||||| ||
Sbjct 538 TGGGGGTATTGGATAGGGAACAT 560
>seq222699
Length=2956
Score = 143 bits (158), Expect = 4e-29
Identities = 245/353 (69%), Gaps = 2/353 (1%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| |||||||| || || || |||| || ||||||||||| || |||||
Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078
|||||||| | ||| ||||| || ||||||||||| || ||| | | || || |||||
Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 551
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138
|||||| || || ||| ||||| || || | ||| || | | || || ||| ||
Sbjct 550 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491
Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198
||| ||||| | ||||||||| ||||| || || || |||| ||| ||
Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431
Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258
|| | || ||||| | ||||| | || || || | | ||||| ||||| ||
Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371
Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311
|| || ||||| || ||||| ||||| || ||||||||| | |||||||
Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGG 318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716257333117400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |