Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq205188 165 1e-35 seq222699 143 4e-29 >seq205188 Length=846 Score = 165 bits (182), Expect = 1e-35 Identities = 377/563 (67%), Gaps = 6/563 (1%) Strand=Plus/Plus Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034 || ||||||||||| | || ||||||||||| || |||||||| ||||| ||||| Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60 Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCCAGAAAAGAAGATTCCTTCTACTGC 50093 || || || ||||| || ||||| ||||| | || || ||||||||||| || || Sbjct 61 CGTTTCTTGAGCCAGAAGATGGA-GCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCA 119 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCA 50153 |||||| || || | | ||| | | | || | ||||| | ||||| Sbjct 120 GGCAAATGCGACGATGCGCTCGGCGAAGGAGTCGGAAGAGTCGATCCAGCGGAGGGCCCA 179 Query 50154 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 50213 | ||||||||| | ||||| || || || || ||||| | ||||||| | |||| || Sbjct 180 GTTGGCCTTCTTGGTGACACAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCTC 239 Query 50214 ATTAC--TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 ||| ||||| | || || |||| | || || ||||| || || |||||||| Sbjct 240 --TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTC 297 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 || ||||| ||||| || ||||| || | ||||||| | ||| || || | | Sbjct 298 TCGATGGCGATCTGGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCATA 357 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || || | || | ||||| || || ||||| ||| || || || || | || Sbjct 358 AAACGGCCGGCGAGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGGACG 417 Query 50392 TGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 50451 || | || ||||| ||| | || || | ||||||| |||| || | ||| Sbjct 418 TGGGTGATGAAATGGCGCTCGCCGTCGGTGAGAGTGTTCCAATGGCTGATGTCCTGAGAG 477 Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 50511 | ||| || || ||| | ||||| || || || ||||| || || ||||| | |||||| Sbjct 478 AGATCGACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTGTACATTTCCCAGATT 537 Query 50512 TCATGATATTGGATTGGGAAAAT 50534 | | |||||||| ||||| || Sbjct 538 TGGGGGTATTGGATAGGGAACAT 560 >seq222699 Length=2956 Score = 143 bits (158), Expect = 4e-29 Identities = 245/353 (69%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || || || |||| || ||||||||||| || ||||| Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| | ||| ||||| || ||||||||||| || ||| | | || || ||||| Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 551 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 |||||| || || ||| ||||| || || | ||| || | | || || ||| || Sbjct 550 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| ||||| | ||||||||| ||||| || || || |||| ||| || Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 || | || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 || || ||||| || ||||| ||||| || ||||||||| | ||||||| Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGG 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716257333117400