Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq39107 95.1 9e-15
seq44648 86.0 5e-12
>seq39107
Length=55737
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| |||| ||| ||||||||| | |||||||| | | || | | |||| ||
Sbjct 26306 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 26247
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
| |||||| || || |||||||| | ||| ||||| | || | ||||||||| ||
Sbjct 26246 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 26187
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | ||| || || | || || || | || ||||||||
Sbjct 26186 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 26127
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||||| | ||||||||| || ||||||||
Sbjct 26126 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| |||| ||| ||||||||| | |||||||| | | || | | |||| ||
Sbjct 29629 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 29570
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
| |||||| || || |||||||| | ||| ||||| | || | ||||||||| ||
Sbjct 29569 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 29510
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | ||| || || | || || || | || ||||||||
Sbjct 29509 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 29450
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||||| | ||||||||| || ||||||||
Sbjct 29449 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| |||| ||| ||||||||| | |||||||| | | || | | |||| ||
Sbjct 46560 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 46501
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
| |||||| || || |||||||| | ||| ||||| | || | ||||||||| ||
Sbjct 46500 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 46441
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | ||| || || | || || || | || ||||||||
Sbjct 46440 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 46381
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||||| | ||||||||| || ||||||||
Sbjct 46380 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| |||| ||| |||||| || | ||||||||||| | || | | | || ||
Sbjct 48534 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 48475
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| |||||| || |||||||| | | ||| ||||| | || | || ||||| ||
Sbjct 48474 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 48415
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | ||||| | ||| || || | ||| || || | ||||| |||||
Sbjct 48414 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 48355
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| |||| ||| ||||||||||| |||||
Sbjct 48354 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 48325
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| |||| ||| |||||| || | ||||||||||| | || | | | || ||
Sbjct 49797 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 49738
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| |||||| || |||||||| | | ||| ||||| | || | || ||||| ||
Sbjct 49737 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 49678
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | ||||| | ||| || || | ||| || || | ||||| |||||
Sbjct 49677 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 49618
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| |||| ||| ||||||||||| |||||
Sbjct 49617 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 49588
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| ||| || |||||| || | ||||||||||| | || | | | || ||
Sbjct 43480 CACCAAGTGGCGCGTCGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 43421
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| |||||| || |||||||| | | ||| ||||| | || | || ||||| ||
Sbjct 43420 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 43361
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | ||||| | ||| || || | ||| || || | ||||| |||||
Sbjct 43360 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 43301
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| |||| ||| ||||||||||| |||||
Sbjct 43300 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 43271
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || |||||||||||||| | |||| ||||| || | || ||||| |
Sbjct 17005 CCCCCACGAAGCCTTAACACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCAGCA 16946
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| |||||| | || |||| || || || ||||| || | | || || || | ||
Sbjct 16945 AGTGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGA 16886
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||| ||||| || ||| ||| | || || || ||| || || | || ||
Sbjct 16885 ATACCCTCTTTGTC-CTGTATCTTTGCCTTTACATTGTCAATGGTATCAGAACTTTCAAC 16827
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || ||||||||||| || ||||| || ||||||||||||||
Sbjct 16826 CTCCAAAGTAATAGTTTTTCCCGTCAGAGTCTTGACAAAAATTTGCAT 16779
>seq44648
Length=6574
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | ||| | | || | ||| | |||| |||||| || | |||||||| | |
Sbjct 5537 CCTCCCCTCAGGCGAAGGACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 5478
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| |||||| | || || | || || || ||||||||||| | || ||||| | ||
Sbjct 5477 AGAGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAGGA 5418
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| || || || || ||| ||| | || || || ||| ||||| | ||||||
Sbjct 5417 ATGCCCTCCTTGTC-CTGTATCTTTGCCTTCACATTGTCAATCGTGTCTGAACTCTCGAC 5359
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | || ||||||||||| || ||||| || |||||||| ||||||
Sbjct 5358 CTCCAAAGTAATAGTTTTTCCAGTAAGAGTCTTGACAAAAATCTGCATT 5310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380328298314030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |