Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq39107 95.1 9e-15 seq44648 86.0 5e-12 >seq39107 Length=55737 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| |||| ||| ||||||||| | |||||||| | | || | | |||| || Sbjct 26306 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 26247 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | |||||| || || |||||||| | ||| ||||| | || | ||||||||| || Sbjct 26246 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 26187 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || | ||| || || | || || || | || |||||||| Sbjct 26186 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 26127 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| | ||||||||| || |||||||| Sbjct 26126 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| |||| ||| ||||||||| | |||||||| | | || | | |||| || Sbjct 29629 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 29570 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | |||||| || || |||||||| | ||| ||||| | || | ||||||||| || Sbjct 29569 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 29510 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || | ||| || || | || || || | || |||||||| Sbjct 29509 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 29450 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| | ||||||||| || |||||||| Sbjct 29449 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| |||| ||| ||||||||| | |||||||| | | || | | |||| || Sbjct 46560 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 46501 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | |||||| || || |||||||| | ||| ||||| | || | ||||||||| || Sbjct 46500 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 46441 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || | ||| || || | || || || | || |||||||| Sbjct 46440 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 46381 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| | ||||||||| || |||||||| Sbjct 46380 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| |||| ||| |||||| || | ||||||||||| | || | | | || || Sbjct 48534 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 48475 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || |||||| || |||||||| | | ||| ||||| | || | || ||||| || Sbjct 48474 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 48415 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | ||||| | ||| || || | ||| || || | ||||| ||||| Sbjct 48414 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 48355 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| |||| ||| ||||||||||| ||||| Sbjct 48354 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 48325 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| |||| ||| |||||| || | ||||||||||| | || | | | || || Sbjct 49797 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 49738 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || |||||| || |||||||| | | ||| ||||| | || | || ||||| || Sbjct 49737 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 49678 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | ||||| | ||| || || | ||| || || | ||||| ||||| Sbjct 49677 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 49618 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| |||| ||| ||||||||||| ||||| Sbjct 49617 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 49588 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| ||| || |||||| || | ||||||||||| | || | | | || || Sbjct 43480 CACCAAGTGGCGCGTCGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 43421 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || |||||| || |||||||| | | ||| ||||| | || | || ||||| || Sbjct 43420 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 43361 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | ||||| | ||| || || | ||| || || | ||||| ||||| Sbjct 43360 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 43301 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| |||| ||| ||||||||||| ||||| Sbjct 43300 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 43271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || |||||||||||||| | |||| ||||| || | || ||||| | Sbjct 17005 CCCCCACGAAGCCTTAACACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCAGCA 16946 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||| || || || ||||| || | | || || || | || Sbjct 16945 AGTGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGA 16886 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| ||||| || ||| ||| | || || || ||| || || | || || Sbjct 16885 ATACCCTCTTTGTC-CTGTATCTTTGCCTTTACATTGTCAATGGTATCAGAACTTTCAAC 16827 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || ||||| || |||||||||||||| Sbjct 16826 CTCCAAAGTAATAGTTTTTCCCGTCAGAGTCTTGACAAAAATTTGCAT 16779 >seq44648 Length=6574 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | || | ||| | |||| |||||| || | |||||||| | | Sbjct 5537 CCTCCCCTCAGGCGAAGGACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 5478 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || || | || || || ||||||||||| | || ||||| | || Sbjct 5477 AGAGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAGGA 5418 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| ||| | || || || ||| ||||| | |||||| Sbjct 5417 ATGCCCTCCTTGTC-CTGTATCTTTGCCTTCACATTGTCAATCGTGTCTGAACTCTCGAC 5359 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| || ||||| || |||||||| |||||| Sbjct 5358 CTCCAAAGTAATAGTTTTTCCAGTAAGAGTCTTGACAAAAATCTGCATT 5310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380328298314030