Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq222699 147 3e-30 seq6366 87.8 2e-12 >seq222699 Length=2956 Score = 147 bits (162), Expect = 3e-30 Identities = 382/577 (66%), Gaps = 4/577 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || || ||||||| || | ||||||||| || ||||| Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| | ||| ||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 551 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 |||||| || || || ||||| | || | ||| || | | | || ||| || Sbjct 550 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| ||||| | ||||||||| ||||| || || || |||| ||| || Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 || | || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| || ||||| ||||| || ||||||||| | |||||||| | || Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGGCGGCTTG 311 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 | ||| | || || | || | |||||| || || ||||| ||| ||||| Sbjct 310 GATTTCCTTCATGAAGCGGGCGGCGAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAA 251 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TTCCAATCAT 42542 || || | || || | || || || ||| ||| | | | | | ||| | Sbjct 250 GAAGGCGAGGACGTGGGTGATGAAGTAGCGCTCG-CCGTCGGTGAGGGAGTCCCAGTGGC 192 Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 || |||| || | ||| || ||||| | ||||| || || ||||| || || || | Sbjct 191 GGAGGTCTTGGGAAAGATCAACCTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTTGT 132 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 |||| | ||| || | | ||||| |||||||| || Sbjct 131 ACATTTCCCAAATTTGGGGGTATTGGATTGGGAACAT 95 >seq6366 Length=10312 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 72278 ||||||||||| ||||||||| |||| ||||| || | ||| || || || |||| Sbjct 181 CAACATTGGAAAAATACCATTTGATGTCCCATTTGTGCAACGGATGTAACTACCCGTGGC 240 Query 72279 ACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338 |||||||||| || || | ||| ||||| || || ||| || | || || Sbjct 241 ACGAATATTGTGAACAGAAACACCAATTCCACCAGCTGATTTGCTAATGATAGCACACTC 300 Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 72381 || || || ||||| || ||||||||||||||||| ||||| Sbjct 301 CTTCAAAGTGTCATATATTCCCTCTATACTATCATCTTTCATG 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669259716616600