Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq222699 147 3e-30
seq6366 87.8 2e-12
>seq222699
Length=2956
Score = 147 bits (162), Expect = 3e-30
Identities = 382/577 (66%), Gaps = 4/577 (1%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| ||||| |||||||| || || ||||||| || | ||||||||| || |||||
Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183
|||||||| | ||| ||||| || ||||||||||| || ||| | | | || || |||||
Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 551
Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243
|||||| || || || ||||| | || | ||| || | | | || ||| ||
Sbjct 550 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491
Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303
||| ||||| | ||||||||| ||||| || || || |||| ||| ||
Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431
Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363
|| | || ||||| | ||||| | || || || | | ||||| ||||| ||
Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371
Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423
|| || ||||| || ||||| ||||| || ||||||||| | |||||||| | ||
Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGGCGGCTTG 311
Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483
| ||| | || || | || | |||||| || || ||||| ||| |||||
Sbjct 310 GATTTCCTTCATGAAGCGGGCGGCGAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAA 251
Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TTCCAATCAT 42542
|| || | || || | || || || ||| ||| | | | | | ||| |
Sbjct 250 GAAGGCGAGGACGTGGGTGATGAAGTAGCGCTCG-CCGTCGGTGAGGGAGTCCCAGTGGC 192
Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602
|| |||| || | ||| || ||||| | ||||| || || ||||| || || || |
Sbjct 191 GGAGGTCTTGGGAAAGATCAACCTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTTGT 132
Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639
|||| | ||| || | | ||||| |||||||| ||
Sbjct 131 ACATTTCCCAAATTTGGGGGTATTGGATTGGGAACAT 95
>seq6366
Length=10312
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 72278
||||||||||| ||||||||| |||| ||||| || | ||| || || || ||||
Sbjct 181 CAACATTGGAAAAATACCATTTGATGTCCCATTTGTGCAACGGATGTAACTACCCGTGGC 240
Query 72279 ACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338
|||||||||| || || | ||| ||||| || || ||| || | || ||
Sbjct 241 ACGAATATTGTGAACAGAAACACCAATTCCACCAGCTGATTTGCTAATGATAGCACACTC 300
Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 72381
|| || || ||||| || ||||||||||||||||| |||||
Sbjct 301 CTTCAAAGTGTCATATATTCCCTCTATACTATCATCTTTCATG 343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 669259716616600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |