Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq39107 91.5 1e-13
seq158136 89.7 5e-13
seq95677 82.4 8e-11
>seq39107
Length=55737
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026
||||| | || || || | || || || || || || ||||||||| | || |||
Sbjct 41151 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTC 41092
Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086
|| |||||||||||||||||| | || | | ||| ||||| ||||| || || |||
Sbjct 41091 CCATCCTCGAGTTGTTTACCAGCAAAAATTAACCTTTGTTGATCCGGAGGGATACCCTCT 41032
Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146
||||| || || || | | || | ||||| | | ||||||||||| ||
Sbjct 41031 TTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTG 40972
Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| |||||||| ||||| ||||| || || || |||||
Sbjct 40971 ATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026
||||| | || || || | || || || ||||| ||||||||||| | || ||
Sbjct 26314 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 26255
Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086
||| || |||||||||||||| | |||| | |||||||| ||||| || ||||||
Sbjct 26254 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 26195
Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146
||||| || || || | | || | || || | || ||| || || | ||
Sbjct 26194 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 26135
Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| || || |||||||| ||||| ||||| ||||||||
Sbjct 26134 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026
||||| | || || || | || || || ||||| ||||||||||| | || ||
Sbjct 29637 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 29578
Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086
||| || |||||||||||||| | |||| | |||||||| ||||| || ||||||
Sbjct 29577 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 29518
Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146
||||| || || || | | || | || || | || ||| || || | ||
Sbjct 29517 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 29458
Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| || || |||||||| ||||| ||||| ||||||||
Sbjct 29457 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026
||||| | || || || | || || || ||||| ||||||||||| | || ||
Sbjct 46568 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 46509
Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086
||| || |||||||||||||| | |||| | |||||||| ||||| || ||||||
Sbjct 46508 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 46449
Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146
||||| || || || | | || | || || | || ||| || || | ||
Sbjct 46448 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 46389
Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| || || |||||||| ||||| ||||| ||||||||
Sbjct 46388 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351
>seq158136
Length=352
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | || ||||| | ||||| ||||| || ||||||||||||
Sbjct 247 CCACCACGGAGACGAAGCACCAAATGCAGGGTAGACTCTTTCTGAATGTTGTAATCGGCA 188
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | || || || ||||| |||||| | || || | |||||| || || ||
Sbjct 187 AGGGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGGG 128
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || |||||||| ||| || || | | || | ||||| | | ||| |||
Sbjct 127 ATACCCTCTTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCCACT 68
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| ||| | ||||| || |||||||| || || || ||||||||
Sbjct 67 TCAAGAGTGATTGTCTTTCCCGTCAATGTCTTCACAAAGATTTGCAT 21
>seq95677
Length=6839
Score = 82.4 bits (90), Expect = 8e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031
||| || || |||| || ||||| ||||||||||| ||||| | ||||| ||
Sbjct 679 CAAGACCAAGTGAAGGGTTGATTCCTTTTGTATGTTATAATCAGCAAGTGTGCGACCATC 620
Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
||||||||| ||||||||| | |||| | ||||| || ||||| || ||||| |||||
Sbjct 619 TTCGAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTC 560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505594537861200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |