Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq39107 91.5 1e-13 seq158136 89.7 5e-13 seq95677 82.4 8e-11 >seq39107 Length=55737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | || || || | || || || || || || ||||||||| | || ||| Sbjct 41151 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTC 41092 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 || |||||||||||||||||| | || | | ||| ||||| ||||| || || ||| Sbjct 41091 CCATCCTCGAGTTGTTTACCAGCAAAAATTAACCTTTGTTGATCCGGAGGGATACCCTCT 41032 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| || || || | | || | ||||| | | ||||||||||| || Sbjct 41031 TTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTG 40972 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||||||| ||||| ||||| || || || ||||| Sbjct 40971 ATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | || || || | || || || ||||| ||||||||||| | || || Sbjct 26314 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 26255 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||| || |||||||||||||| | |||| | |||||||| ||||| || |||||| Sbjct 26254 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 26195 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| || || || | | || | || || | || ||| || || | || Sbjct 26194 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 26135 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||||||| ||||| ||||| |||||||| Sbjct 26134 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | || || || | || || || ||||| ||||||||||| | || || Sbjct 29637 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 29578 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||| || |||||||||||||| | |||| | |||||||| ||||| || |||||| Sbjct 29577 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 29518 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| || || || | | || | || || | || ||| || || | || Sbjct 29517 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 29458 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||||||| ||||| ||||| |||||||| Sbjct 29457 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | || || || | || || || ||||| ||||||||||| | || || Sbjct 46568 AAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 46509 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||| || |||||||||||||| | |||| | |||||||| ||||| || |||||| Sbjct 46508 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCT 46449 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| || || || | | || | || || | || ||| || || | || Sbjct 46448 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTG 46389 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||||||| ||||| ||||| |||||||| Sbjct 46388 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351 >seq158136 Length=352 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | ||||| ||||| || |||||||||||| Sbjct 247 CCACCACGGAGACGAAGCACCAAATGCAGGGTAGACTCTTTCTGAATGTTGTAATCGGCA 188 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || ||||| |||||| | || || | |||||| || || || Sbjct 187 AGGGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGGG 128 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 127 ATACCCTCTTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCCACT 68 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || |||||||| || || || |||||||| Sbjct 67 TCAAGAGTGATTGTCTTTCCCGTCAATGTCTTCACAAAGATTTGCAT 21 >seq95677 Length=6839 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || || |||| || ||||| ||||||||||| ||||| | ||||| || Sbjct 679 CAAGACCAAGTGAAGGGTTGATTCCTTTTGTATGTTATAATCAGCAAGTGTGCGACCATC 620 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||||||| ||||||||| | |||| | ||||| || ||||| || ||||| ||||| Sbjct 619 TTCGAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTC 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505594537861200