Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq222699 141 1e-28 seq205188 141 1e-28 >seq222699 Length=2956 Score = 141 bits (156), Expect = 1e-28 Identities = 377/562 (67%), Gaps = 22/562 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| || || | ||||| || ||||| | ||||||||| ||||| Sbjct 119 ATTTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCTGGACCGCCGAAGAGGTTGATCTT 178 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| | ||||| | | ||||| | | | || || ||||| | || || | Sbjct 179 TCCCAAGACCTCCGCCACTGGGACTCCC---TCACCGACGGCGAGCGCTACTTCATCACC 235 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | ||||||||||||| |||||| || ||||| ||| || || | || Sbjct 236 CACGTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTCGCCGCCCGC 295 Query 125199 TTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || | ||| || |||| |||||||| ||||| ||||| ||| Sbjct 296 TTCATGAAGGAAAT--CCAAGCCGCCGAGGCC-CGTGCTTTCTACGGCTTCCAGATCGCC 352 Query 125256 ATTGAGAACGTGCACTCGGAAATGTAC--TCTACACTGATTGACATGTACATTCGCGATC 125313 || |||||| | ||||| || |||||| ||| | || | || | ||||| || Sbjct 353 ATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCT--TGGAAACCTACATCAAAGACT 410 Query 125314 CGCAACGTAAACACATG--CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 | || || ||| | || || || ||| | || || | || | | | || || Sbjct 411 C-CACCGAAAAGA-ATCACCTGTTCCGCGCCGTAGATACCATCCCCTGTGTCGCCAAGAA 468 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| ||||||| | || |||||||||| | | | || | ||||| | || || Sbjct 469 GGCCCAATGGGCCTTGCGCTGGATCGATGCCACCGACTCCTTT---GCCGAGCGCCTCGT 525 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGC 125490 || |||||| ||| ||||| |||||||| || || || || ||| | || ||||||| Sbjct 526 CGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGCTTCTGCT-CGATATTTTGGC 584 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 | ||||||||||| | |||||||| || || | ||||| | ||||| ||||| | Sbjct 585 TAAAGAAGCGCGGCTTGATGCCCGGCCTCACCTTCTCCAACGAACTCATATCGCGAGATG 644 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 | || || ||||| ||||| || Sbjct 645 AAGGGCTTCACTGCGACTTCGC 666 >seq205188 Length=846 Score = 141 bits (156), Expect = 1e-28 Identities = 372/551 (68%), Gaps = 24/551 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||||||||||||| || || | ||||| || ||||||| || ||||||||||| Sbjct 536 ATCTGGGAAATGTACAAGAAAGCAGAAGCCTCGTTCTGGACGGCGGAGGAGGTCGATCTC 477 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| | | ||||| | |||| | || || ||||| | || || | Sbjct 476 TCTCAGGACATCAGCCATTGGAACACTC---TCACCGACGGCGAGCGCCATTTCATCACC 420 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | |||||||| |||| |||||| || ||||| ||| || || | | | || Sbjct 419 CACGTCCTTGCCTTCTTCGCCGCCTCCGACGGCATCGTACTCGAAAACCTCGCCGGC-CG 361 Query 125198 ATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254 || | | ||| | | ||| || | |||| || || |||||||| ||||| ||| Sbjct 360 TTT-TATGAAG-GAGGTCCAGGTCTCCGAGGCC-CGCGCCTTTTACGGCTTCCAGATCGC 304 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA-TC 125313 || |||||| | ||||| || |||||| || | || | ||||| || || Sbjct 303 CATCGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAAACCTACATAAAAGACTC 244 Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || | | ||| | | |||||| |||| || ||||| | || | | | || |||| Sbjct 243 CGTAGAGAAAAGCCGT-CTCTTTCACGCCATTGACACCATTCCCTGTGTCACCAAGAAGG 185 Query 125374 CTCAATGGGTGATTCGGTGGATCGA---TGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 | | |||| | || |||||||| | |||| || | |||||| | | | Sbjct 184 CCAACTGGGCCCTCCGCTGGATCGACTCTTCCGAC------TCCTTCGCCGAGCGCATCG 131 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGG 125489 | ||||| ||| ||| ||||| |||||||| || || || |||||| ||||||| ||| Sbjct 130 TCGCATTTGCCTGCGTTGAGGGAATCTTCTTCTCCGGAAGCTTTTGCT-CCATCTTCTGG 72 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||| || || |||||||| ||||| || | ||||| | || || || ||| Sbjct 71 CTCAAGAAACGGGGCCTCATGCCAGGACTCACCTTCTCCAACGAACTCATCTCCCGCGAC 12 Query 125550 GAGGGCCTACA 125560 ||||| || || Sbjct 11 GAGGGTCTCCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738983910026600