Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq39107 127 2e-24
>seq39107
Length=55737
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||| |||||||| |||||||||||||| || | || | | |||||
Sbjct 48534 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 48475
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||| |||||||| ||| ||||||| |||||||||||| || | ||||||||||||
Sbjct 48474 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 48415
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | | | ||||| | |||| || | ||| ||||||||
Sbjct 48414 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 48355
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| |||||||| || |||||||| |||||
Sbjct 48354 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 48325
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||| |||||||| |||||||||||||| || | || | | |||||
Sbjct 49797 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 49738
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||| |||||||| ||| ||||||| |||||||||||| || | ||||||||||||
Sbjct 49737 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 49678
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | | | ||||| | |||| || | ||| ||||||||
Sbjct 49677 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 49618
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| |||||||| || |||||||| |||||
Sbjct 49617 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 49588
Score = 122 bits (134), Expect = 7e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| ||| |||||||| |||||||||||||| || | || | | |||||
Sbjct 43480 CACCAAGTGGCGCGTCGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 43421
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||| |||||||| ||| ||||||| |||||||||||| || | ||||||||||||
Sbjct 43420 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 43361
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | | | ||||| | |||| || | ||| ||||||||
Sbjct 43360 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 43301
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| |||||||| || |||||||| |||||
Sbjct 43300 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 43271
Score = 114 bits (126), Expect = 1e-20
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 18807 ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGT 18866
|||| |||| || || | ||| || |||| ||||| ||||| || || || || ||||
Sbjct 44005 ATTGCATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGT 43946
Query 18867 AATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGAT 18926
||||||| | ||| | | || || |||||||| || ||| | ||||| ||||||||||
Sbjct 43945 AATCCGCAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGAT 43886
Query 18927 CCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG 18986
| ||| | ||||| || || ||| || ||| || | | | | ||||| |
Sbjct 43885 CTGGGGGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAAC 43826
Query 18987 GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|||| ||| | || ||||| || ||||| || || || |||||||||||||||
Sbjct 43825 TCTCCACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 43770
Score = 111 bits (122), Expect = 1e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 18807 ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGT 18866
|||| |||| || || | ||| || |||| ||||| ||||| || || || || ||||
Sbjct 49015 ATTGCATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGT 48956
Query 18867 AATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGAT 18926
||||||| | || | | || || |||||||| || ||| | ||||| ||||||||||
Sbjct 48955 AATCCGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGAT 48896
Query 18927 CCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG 18986
| ||| | ||||| || || ||| || ||| || | | | | ||||| |
Sbjct 48895 CTGGGGGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAAC 48836
Query 18987 GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|||| ||| | || ||||| || ||||| || || || |||||||||||||||
Sbjct 48835 TCTCCACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 48780
Score = 111 bits (122), Expect = 1e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 18807 ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGT 18866
|||| |||| || || | ||| || |||| ||||| ||||| || || || || ||||
Sbjct 50278 ATTGCATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGT 50219
Query 18867 AATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGAT 18926
||||||| | || | | || || |||||||| || ||| | ||||| ||||||||||
Sbjct 50218 AATCCGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGAT 50159
Query 18927 CCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG 18986
| ||| | ||||| || || ||| || ||| || | | | | ||||| |
Sbjct 50158 CTGGGGGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAAC 50099
Query 18987 GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|||| ||| | || ||||| || ||||| || || || |||||||||||||||
Sbjct 50098 TCTCCACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 50043
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||| |||||||||||||| |||||||| || | ||| | |||||||
Sbjct 26306 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 26247
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|| |||||||| || |||| | |||||||||||| || | || ||||||||
Sbjct 26246 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 26187
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | | | ||||| | ||| || | ||| || |||||
Sbjct 26186 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 26127
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || |||||||| || || ||||||||
Sbjct 26126 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||| |||||||||||||| |||||||| || | ||| | |||||||
Sbjct 29629 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 29570
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|| |||||||| || |||| | |||||||||||| || | || ||||||||
Sbjct 29569 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 29510
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | | | ||||| | ||| || | ||| || |||||
Sbjct 29509 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 29450
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || |||||||| || || ||||||||
Sbjct 29449 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||| |||||||||||||| |||||||| || | ||| | |||||||
Sbjct 46560 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 46501
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|| |||||||| || |||| | |||||||||||| || | || ||||||||
Sbjct 46500 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 46441
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | | | ||||| | ||| || | ||| || |||||
Sbjct 46440 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 46381
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || |||||||| || || ||||||||
Sbjct 46380 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||| |||||||| |||||||||||||| || | ||| | | |||||
Sbjct 41143 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTC 41084
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|| |||||||| ||| |||| | || || |||||| || | |||||||||||
Sbjct 41083 GAGTTGTTTACCAGCAAAAATTAACCTTTGTTGATCCGGAGGGATACCCTCTTTGTCCTG 41024
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | | | || || | || ||| | ||| ||||| ||
Sbjct 41023 GATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTGATGGTCTT 40964
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || |||||||| ||||| || |||||
Sbjct 40963 GCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413440839414790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |