Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq39107 127 2e-24 >seq39107 Length=55737 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||| |||||||| |||||||||||||| || | || | | ||||| Sbjct 48534 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 48475 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| |||||||| ||| ||||||| |||||||||||| || | |||||||||||| Sbjct 48474 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 48415 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | ||||| | |||| || | ||| |||||||| Sbjct 48414 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 48355 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||||||| || |||||||| ||||| Sbjct 48354 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 48325 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||| |||||||| |||||||||||||| || | || | | ||||| Sbjct 49797 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 49738 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| |||||||| ||| ||||||| |||||||||||| || | |||||||||||| Sbjct 49737 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 49678 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | ||||| | |||| || | ||| |||||||| Sbjct 49677 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 49618 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||||||| || |||||||| ||||| Sbjct 49617 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 49588 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| ||| |||||||| |||||||||||||| || | || | | ||||| Sbjct 43480 CACCAAGTGGCGCGTCGACTCCTTCTGAATATTGTAATCGGCAAGGGTCCTTCCATCCTC 43421 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| |||||||| ||| ||||||| |||||||||||| || | |||||||||||| Sbjct 43420 CAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG 43361 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | ||||| | |||| || | ||| |||||||| Sbjct 43360 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 43301 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||||||| || |||||||| ||||| Sbjct 43300 TCCAGTTAAAGTCTTCACAAAAATCTGCAT 43271 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 18807 ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGT 18866 |||| |||| || || | ||| || |||| ||||| ||||| || || || || |||| Sbjct 44005 ATTGCATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGT 43946 Query 18867 AATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGAT 18926 ||||||| | ||| | | || || |||||||| || ||| | ||||| |||||||||| Sbjct 43945 AATCCGCAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGAT 43886 Query 18927 CCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG 18986 | ||| | ||||| || || ||| || ||| || | | | | ||||| | Sbjct 43885 CTGGGGGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAAC 43826 Query 18987 GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| | || ||||| || ||||| || || || ||||||||||||||| Sbjct 43825 TCTCCACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 43770 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 18807 ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGT 18866 |||| |||| || || | ||| || |||| ||||| ||||| || || || || |||| Sbjct 49015 ATTGCATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGT 48956 Query 18867 AATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGAT 18926 ||||||| | || | | || || |||||||| || ||| | ||||| |||||||||| Sbjct 48955 AATCCGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGAT 48896 Query 18927 CCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG 18986 | ||| | ||||| || || ||| || ||| || | | | | ||||| | Sbjct 48895 CTGGGGGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAAC 48836 Query 18987 GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| | || ||||| || ||||| || || || ||||||||||||||| Sbjct 48835 TCTCCACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 48780 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 18807 ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGT 18866 |||| |||| || || | ||| || |||| ||||| ||||| || || || || |||| Sbjct 50278 ATTGCATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGT 50219 Query 18867 AATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGAT 18926 ||||||| | || | | || || |||||||| || ||| | ||||| |||||||||| Sbjct 50218 AATCCGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGAT 50159 Query 18927 CCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG 18986 | ||| | ||||| || || ||| || ||| || | | | | ||||| | Sbjct 50158 CTGGGGGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAAC 50099 Query 18987 GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| | || ||||| || ||||| || || || ||||||||||||||| Sbjct 50098 TCTCCACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 50043 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||| |||||||||||||| |||||||| || | ||| | ||||||| Sbjct 26306 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 26247 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| || |||| | |||||||||||| || | || |||||||| Sbjct 26246 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 26187 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | ||||| | ||| || | ||| || ||||| Sbjct 26186 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 26127 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| || || |||||||| Sbjct 26126 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||| |||||||||||||| |||||||| || | ||| | ||||||| Sbjct 29629 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 29570 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| || |||| | |||||||||||| || | || |||||||| Sbjct 29569 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 29510 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | ||||| | ||| || | ||| || ||||| Sbjct 29509 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 29450 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| || || |||||||| Sbjct 29449 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||| |||||||||||||| |||||||| || | ||| | ||||||| Sbjct 46560 CACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 46501 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| || |||| | |||||||||||| || | || |||||||| Sbjct 46500 AAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 46441 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | ||||| | ||| || | ||| || ||||| Sbjct 46440 GATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCACCTCCAGGGTGATAGTTTT 46381 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| || || |||||||| Sbjct 46380 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||| |||||||| |||||||||||||| || | ||| | | ||||| Sbjct 41143 CACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTC 41084 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| ||| |||| | || || |||||| || | ||||||||||| Sbjct 41083 GAGTTGTTTACCAGCAAAAATTAACCTTTGTTGATCCGGAGGGATACCCTCTTTGTCCTG 41024 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | || || | || ||| | ||| ||||| || Sbjct 41023 GATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTGATGGTCTT 40964 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| ||||| || ||||| Sbjct 40963 GCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413440839414790