Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq39107 111 1e-19 seq158136 82.4 5e-11 >seq39107 Length=55737 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||| | | |||||| || |||||| ||| || |||||||| |||||| Sbjct 48551 CCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGC- 48493 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || ||| |||| |||||| || ||||| || | || ||||| ||| |||| Sbjct 48492 AAGGGTCCTTCCATCCTCCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGG 48433 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| || || ||||| || ||| ||||||| |||||| Sbjct 48432 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCAC 48373 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || ||||||||||||||||| || ||||| Sbjct 48372 CTCCAAGGTTATGGTTTTTCCAGTTAAAGTCTTCACAAAAATCTGCAT 48325 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||| | | |||||| || |||||| ||| || |||||||| |||||| Sbjct 49814 CCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGGC- 49756 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || ||| |||| |||||| || ||||| || | || ||||| ||| |||| Sbjct 49755 AAGGGTCCTTCCATCCTCCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGG 49696 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| || || ||||| || ||| ||||||| |||||| Sbjct 49695 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCAC 49636 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || ||||||||||||||||| || ||||| Sbjct 49635 CTCCAAGGTTATGGTTTTTCCAGTTAAAGTCTTCACAAAAATCTGCAT 49588 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGT 43970 |||||| || |||| ||| || |||||||| |||||| || | | || ||| | Sbjct 43480 CACCAAGTGGCGCGTCGACTCCTTCTGAATATTGTAATCGGC-AAGGGTCCTTCCATCCT 43422 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||| |||||| || ||||| || | || ||||| ||| |||| | || ||||| ||| Sbjct 43421 CCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCTTTGTCTT 43362 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || || ||||| || ||| ||||||| |||||| || | || || |||| Sbjct 43361 GGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTT 43302 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||||||||||||||| || ||||| Sbjct 43301 TTCCAGTTAAAGTCTTCACAAAAATCTGCAT 43271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||| || ||||| || | || |||||||| | || | ||| || | Sbjct 16707 CATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCT 16648 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || ||| || || ||| ||||||| |||||| || | |||| Sbjct 16647 TATCCTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAA 16588 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| ||||| |||||||||||||| ||||||||| Sbjct 16587 TAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 16550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||| || ||||| || | || |||||||| | || | ||| || | Sbjct 26481 CATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCT 26422 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || ||| || || ||| ||||||| |||||| || | |||| Sbjct 26421 TATCCTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAA 26362 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| ||||| |||||||||||||| ||||||||| Sbjct 26361 TAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 26324 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||| || ||||| || | || |||||||| | || | ||| || | Sbjct 29804 CATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCT 29745 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || ||| || || ||| ||||||| |||||| || | |||| Sbjct 29744 TATCCTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAA 29685 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| ||||| |||||||||||||| ||||||||| Sbjct 29684 TAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 29647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||| || ||||| || | || |||||||| | || | ||| || | Sbjct 46735 CATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCT 46676 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || ||| || || ||| ||||||| |||||| || | |||| Sbjct 46675 TATCCTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAA 46616 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| ||||| |||||||||||||| ||||||||| Sbjct 46615 TAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 46578 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 |||||||||||||| || ||| || || || || |||||||| | | |||| || Sbjct 16993 CTTAACACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCAGCAAGTGTACGCCCA 16934 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || |||| || || || ||||| || | || ||||||||| | || | ||| ||||| Sbjct 16933 TCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGAATACCCTCTTTG 16874 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || || ||| || || | ||| ||||| | || || || | ||||| Sbjct 16873 TCCTGTATCTTTGCCTTTACATTGTCAATGGTATCAGAACTTTCAACCTCCAAAGTAATA 16814 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || || | |||||| ||||| ||||||||| Sbjct 16813 GTTTTTCCCGTCAGAGTCTTGACAAAAATTTGCATG 16778 >seq158136 Length=352 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || |||||| ||||| || |||||| | || |||| || Sbjct 230 CACCAAATGCAGGGTAGACTCTTTCTGAATGTTGTAATCGGCAAGGGTTCGGCCATCCTC 171 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||||| ||||| || | || ||||||||| | || | ||| ||||| || Sbjct 170 AAGCTGTTTTCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCCTG 111 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||||| | ||| || || | ||||| || | || ||||| || Sbjct 110 AATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCCACTTCAAGAGTGATTGTCTT 51 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||||||||| |||||||| Sbjct 50 TCCCGTCAATGTCTTCACAAAGATTTGCAT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353808905817180