Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq219808 143 4e-30 seq68662 129 9e-26 seq89175 109 9e-20 seq69834 104 4e-18 seq64262 104 4e-18 >seq219808 Length=1870 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || |||||||||||||| ||||| || ||||| ||| | |||||||| || Sbjct 1315 GATAACATTCAGGGAATCACCAAGCCCGCTATTCGCCGTCTTGCTAGACGTGGTGGTGTT 1256 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| || ||| | |||| ||||| | |||| |||| | |||||||| ||| || Sbjct 1255 AAACGTATCAGTGGTCTCATCTACGAAGAAACCCGTGGTGTTCTCAAGATCTTTCTCGAG 1196 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || ||| || ||| |||||||||||| || ||||| ||||| || Sbjct 1195 AACGTGATTCGCGACGCTGTCACCTACACCGAGCACGCTCGCCGCAAGACCGTCACTGCC 1136 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | ||||| || | || | |||||| | | | || ||||| || |||| Sbjct 1135 ATGGACGTTGTCTACGCTCTCAAGAGGCAAGGCAGGACCCTCTACGGTTTCGGTGGTTA 1077 >seq68662 Length=5723 Score = 129 bits (142), Expect = 9e-26 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| || ||||| ||||| || ||||| ||||| ||||||| | || Sbjct 5352 TCTCCGTGATAACATTCAGGGAATTACCAAACCTGCTATTCGTCGATTGGCTCGCAGAGG 5293 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| | |||| || || | ||||| || | |||||||| Sbjct 5292 TGGTGTGAAGAGAATCAGTGGTCTCATCTACGAGGAAACTCGTGGAGTCCTCAAGATCTT 5233 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||||| | ||||||| | ||| || ||||| |||| | |||||||| Sbjct 5232 CCTTGAGAATGTTATTCGTGATGCTGTTACCTACACTGAGCATGCTAGGAGGAAGACTGT 5173 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || |||||| | || | || ||| | | | || |||||||| Sbjct 5172 TACTGCCATGGATGTTGTTTATGCACTCAAGAGGCAGGGCAGAACTCTCTACGGTTTTGG 5113 Query 16693 AAGTTAATCTT 16703 |||||| || Sbjct 5112 TGGTTAATTTT 5102 >seq89175 Length=1138 Score = 109 bits (120), Expect = 9e-20 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| || ||||| || ||||| || || || ||| |||||||| | ||||| Sbjct 566 CGTGACAACATTCAGGGAATAACGAAGCCTGCCATTCGGCGTTTGGCTCGTAGGGGTGGT 625 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| | || | |||| ||||||| ||| | |||| |||||||||| || Sbjct 626 GTGAAGCGTATAAGCGGTCTCATCTACGAAGAGACTCGCGGTGTTCTGAAGATCTTTCTT 685 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||| || | || ||||||||||| | | | ||||| || || Sbjct 686 GAGAACGTGATTCGTGACGCGGTTACGTACACCGAGCACGCCAGAAGAAAGACGGTTACG 745 Query 16637 TCCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 746 GCAATGGATGTGGTTTATGC 765 >seq69834 Length=1699 Score = 104 bits (114), Expect = 4e-18 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| || ||||| || ||||| || || || ||| |||||||| | ||||| Sbjct 416 CGCGACAACATACAGGGAATTACGAAGCCTGCAATTCGGCGTTTGGCTCGTAGAGGTGGT 475 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| || ||| | | || ||||||| ||| | ||| | |||||||| || Sbjct 476 GTGAAGCGTATCAGTGGTCTCATATACGAAGAGACTCGCGGCGTTCTCAAGATCTTTCTG 535 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | || || | || ||||||||||| | | | ||||| || || Sbjct 536 GAGAACGTGATTCGCGACGCCGTTACTTACACCGAGCACGCCAGAAGAAAGACCGTTACG 595 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | |||||||| | || | || || | | | |||| || ||||| || Sbjct 596 GCAATGGACGTTGTCTATGCCCTCAAGAGACAGGGAAGAACGCTTTACGGATTTGGGGGT 655 Query 16697 TA 16698 || Sbjct 656 TA 657 >seq64262 Length=3295 Score = 104 bits (114), Expect = 4e-18 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| || || || || || ||||| || || || |||| | | || Sbjct 2955 CTTCGCGATAACATTCAGGGCATAACGAAACCAGCAATTCGGCGATTGGCGAGAAGAGGC 3014 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||| | || ||||||| ||||||| |||| | | ||| | ||||| ||| Sbjct 3015 GGTGTCAAGAGAATCAGTGGATTGATCTATGAGGAGACCAGAGGAGTTCTCAAGATATTC 3074 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || ||| | ||| ||||||||||||| | ||||| || Sbjct 3075 TTGGAGAACGTGATTCGCGACGCTGTGACCTACACCGAGCACGCTAGGAGGAAGACGGTT 3134 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || ||||| |||| | || || | | |||||||||||||| Sbjct 3135 ACGGCCATGGACGTGGTGTATGCCCTGAAGAGACAGGGAAGAACCCTTTATGGTTTTGGA 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78870363231255