Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq219808 143 4e-30
seq68662 129 9e-26
seq89175 109 9e-20
seq69834 104 4e-18
seq64262 104 4e-18
>seq219808
Length=1870
Score = 143 bits (158), Expect = 4e-30
Identities = 175/239 (73%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| || |||||||||||||| ||||| || ||||| ||| | |||||||| ||
Sbjct 1315 GATAACATTCAGGGAATCACCAAGCCCGCTATTCGCCGTCTTGCTAGACGTGGTGGTGTT 1256
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|| ||| || ||| | |||| ||||| | |||| |||| | |||||||| ||| ||
Sbjct 1255 AAACGTATCAGTGGTCTCATCTACGAAGAAACCCGTGGTGTTCTCAAGATCTTTCTCGAG 1196
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | || ||| || ||| |||||||||||| || ||||| ||||| ||
Sbjct 1195 AACGTGATTCGCGACGCTGTCACCTACACCGAGCACGCTCGCCGCAAGACCGTCACTGCC 1136
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
||||| | ||||| || | || | |||||| | | | || ||||| || ||||
Sbjct 1135 ATGGACGTTGTCTACGCTCTCAAGAGGCAAGGCAGGACCCTCTACGGTTTCGGTGGTTA 1077
>seq68662
Length=5723
Score = 129 bits (142), Expect = 9e-26
Identities = 179/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||| || |||||||| || ||||| ||||| || ||||| ||||| ||||||| | ||
Sbjct 5352 TCTCCGTGATAACATTCAGGGAATTACCAAACCTGCTATTCGTCGATTGGCTCGCAGAGG 5293
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| || ||| | || ||| | |||| || || | ||||| || | ||||||||
Sbjct 5292 TGGTGTGAAGAGAATCAGTGGTCTCATCTACGAGGAAACTCGTGGAGTCCTCAAGATCTT 5233
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| ||| ||||| | ||||||| | ||| || ||||| |||| | ||||||||
Sbjct 5232 CCTTGAGAATGTTATTCGTGATGCTGTTACCTACACTGAGCATGCTAGGAGGAAGACTGT 5173
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| | || |||||| | || | || ||| | | | || ||||||||
Sbjct 5172 TACTGCCATGGATGTTGTTTATGCACTCAAGAGGCAGGGCAGAACTCTCTACGGTTTTGG 5113
Query 16693 AAGTTAATCTT 16703
|||||| ||
Sbjct 5112 TGGTTAATTTT 5102
>seq89175
Length=1138
Score = 109 bits (120), Expect = 9e-20
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || ||||| || ||||| || ||||| || || || ||| |||||||| | |||||
Sbjct 566 CGTGACAACATTCAGGGAATAACGAAGCCTGCCATTCGGCGTTTGGCTCGTAGGGGTGGT 625
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| | || | |||| ||||||| ||| | |||| |||||||||| ||
Sbjct 626 GTGAAGCGTATAAGCGGTCTCATCTACGAAGAGACTCGCGGTGTTCTGAAGATCTTTCTT 685
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| || | ||| || | || ||||||||||| | | | ||||| || ||
Sbjct 686 GAGAACGTGATTCGTGACGCGGTTACGTACACCGAGCACGCCAGAAGAAAGACGGTTACG 745
Query 16637 TCCATGGATATCGTCTATGC 16656
| |||||| | || |||||
Sbjct 746 GCAATGGATGTGGTTTATGC 765
>seq69834
Length=1699
Score = 104 bits (114), Expect = 4e-18
Identities = 168/242 (69%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || ||||| || ||||| || ||||| || || || ||| |||||||| | |||||
Sbjct 416 CGCGACAACATACAGGGAATTACGAAGCCTGCAATTCGGCGTTTGGCTCGTAGAGGTGGT 475
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| || ||| | | || ||||||| ||| | ||| | |||||||| ||
Sbjct 476 GTGAAGCGTATCAGTGGTCTCATATACGAAGAGACTCGCGGCGTTCTCAAGATCTTTCTG 535
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| || | || || | || ||||||||||| | | | ||||| || ||
Sbjct 536 GAGAACGTGATTCGCGACGCCGTTACTTACACCGAGCACGCCAGAAGAAAGACCGTTACG 595
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696
| ||||| | |||||||| | || | || || | | | |||| || ||||| ||
Sbjct 596 GCAATGGACGTTGTCTATGCCCTCAAGAGACAGGGAAGAACGCTTTACGGATTTGGGGGT 655
Query 16697 TA 16698
||
Sbjct 656 TA 657
>seq64262
Length=3295
Score = 104 bits (114), Expect = 4e-18
Identities = 167/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| |||||||| || || || || || ||||| || || || |||| | | ||
Sbjct 2955 CTTCGCGATAACATTCAGGGCATAACGAAACCAGCAATTCGGCGATTGGCGAGAAGAGGC 3014
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||| | || ||||||| ||||||| |||| | | ||| | ||||| |||
Sbjct 3015 GGTGTCAAGAGAATCAGTGGATTGATCTATGAGGAGACCAGAGGAGTTCTCAAGATATTC 3074
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| ||| || | || ||| | ||| ||||||||||||| | ||||| ||
Sbjct 3075 TTGGAGAACGTGATTCGCGACGCTGTGACCTACACCGAGCACGCTAGGAGGAAGACGGTT 3134
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| ||||||| | || ||||| |||| | || || | | ||||||||||||||
Sbjct 3135 ACGGCCATGGACGTGGTGTATGCCCTGAAGAGACAGGGAAGAACCCTTTATGGTTTTGGA 3194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78870363231255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |