Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 282 5e-71
seq95291 237 2e-57
seq78999 123 3e-23
seq13836 107 2e-18
>seq80997
Length=4773
Score = 282 bits (312), Expect = 5e-71
Identities = 327/438 (75%), Gaps = 2/438 (0%)
Strand=Plus/Plus
Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433
||||| | ||| | ||||||||||| || || || || | || |||||||| ||
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACC 135492
|||||||||||| | | | || || |||| |||||| | ||||| |||||||| ||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454
Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552
||| || |||||||| || || || || |||||| |||| |||||| | || ||||| ||
Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514
Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612
||||| |||||||| |||| ||| || || || || | || || ||||| ||
Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574
Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672
||||||||| |||||| ||||||||||| |||| || || ||||||||| ||||| | ||
Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634
Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732
| |||||| | | ||||| | ||||||||||| ||||||||||| || ||
Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCG 4694
Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792
||||||||||| ||||||||| ||| || || | ||| | ||||| || |||||| |
Sbjct 4695 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTAC 4754
Query 135793 TGTTTTCCTGGTCTACCC 135810
||||||| || |||| ||
Sbjct 4755 TGTTTTCTTGATCTATCC 4772
>seq95291
Length=6073
Score = 237 bits (262), Expect = 2e-57
Identities = 303/413 (73%), Gaps = 6/413 (1%)
Strand=Plus/Minus
Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424
|||| || ||||| | ||| | |||| || ||| || || || || | || ||||||
Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011
Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTA--TCTGC-TTTATTGTTGCTTTC 135481
| |||||||||||||| || | | |||| | |||| |||||| | |||||
Sbjct 6010 GATGTTTTGATGATTCCTACT-TTATTGA--CTGCAAATTCTGTATTTATTATCGCTTTT 5954
Query 135482 ATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATG 135541
|||||||| ||||| || |||||||| || || || || | |||| |||| |||||| |
Sbjct 5953 ATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTT 5894
Query 135542 TACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCAC 135601
|| ||||| || ||||| | |||||| |||| ||| || || || || | ||
Sbjct 5893 TATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCAT 5834
Query 135602 TTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTAT 135661
|| ||||| ||||||||||| |||||| ||||||||||| |||| || || |||||||||
Sbjct 5833 TTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTAT 5774
Query 135662 CAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAA 135721
||||| | || | |||||| | | ||||| | ||||||||||| |||||||||
Sbjct 5773 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAA 5714
Query 135722 CTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCC 135774
|| || || ||||||||||| ||||||||| ||| || || ||||| ||
Sbjct 5713 CTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
>seq78999
Length=659
Score = 123 bits (136), Expect = 3e-23
Identities = 215/310 (69%), Gaps = 2/310 (1%)
Strand=Plus/Minus
Query 138568 CTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACT 138627
|||| || | ||||| |||||||| ||||||| ||||| ||||| | | |
Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-T 265
Query 138628 TCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTC 138687
||| |||| | ||||| || || | ||| | ||| | || | |||| | || ||
Sbjct 264 TCTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205
Query 138688 TTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATC 138747
| || || |||||||| || ||||| || || || |||||||||||| |||||||||||
Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145
Query 138748 CTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGA 138807
|| ||| ||||| ||||||||||| | ||| | | || |||||| | |||| ||||
Sbjct 144 CT-TATTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86
Query 138808 TGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAG 138867
||| | ||| | | ||| |||||| || | || || |||| || | ||| |
Sbjct 85 TGGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATG 26
Query 138868 GCAACGCTCT 138877
| ||| ||||
Sbjct 25 GAAACACTCT 16
>seq13836
Length=10167
Score = 107 bits (118), Expect = 2e-18
Identities = 142/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 138144 GGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTT 138203
|| || || ||||||||||| || |||||||| || || | | || || |||||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 138204 CGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTC 138260
|| || ||||| | |||| |||| | || | || || || || |||| |||||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTT---CAATTGCGACCTTATAATGCAACCGCATTC 4586
Query 138261 TCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGT 138320
|| ||||| || ||||| || || || ||||| || ||||| ||||||| || ||
Sbjct 4587 TCAGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGT 4646
Query 138321 TGGTTCTTTGCTCC 138334
||||||||||||||
Sbjct 4647 TGGTTCTTTGCTCC 4660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626209414864000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |