Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq80997 282 5e-71 seq95291 237 2e-57 seq78999 123 3e-23 seq13836 107 2e-18 >seq80997 Length=4773 Score = 282 bits (312), Expect = 5e-71 Identities = 327/438 (75%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | ||||||||||| || || || || | || |||||||| || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACC 135492 |||||||||||| | | | || || |||| |||||| | ||||| |||||||| || Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || || |||||| |||| |||||| | || ||||| || Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 ||||| |||||||| |||| ||| || || || || | || || ||||| || Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 ||||||||| |||||| ||||||||||| |||| || || ||||||||| ||||| | || Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | |||||| | | ||||| | ||||||||||| ||||||||||| || || Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCG 4694 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 ||||||||||| ||||||||| ||| || || | ||| | ||||| || |||||| | Sbjct 4695 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTAC 4754 Query 135793 TGTTTTCCTGGTCTACCC 135810 ||||||| || |||| || Sbjct 4755 TGTTTTCTTGATCTATCC 4772 >seq95291 Length=6073 Score = 237 bits (262), Expect = 2e-57 Identities = 303/413 (73%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 |||| || ||||| | ||| | |||| || ||| || || || || | || |||||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTA--TCTGC-TTTATTGTTGCTTTC 135481 | |||||||||||||| || | | |||| | |||| |||||| | ||||| Sbjct 6010 GATGTTTTGATGATTCCTACT-TTATTGA--CTGCAAATTCTGTATTTATTATCGCTTTT 5954 Query 135482 ATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATG 135541 |||||||| ||||| || |||||||| || || || || | |||| |||| |||||| | Sbjct 5953 ATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTT 5894 Query 135542 TACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCAC 135601 || ||||| || ||||| | |||||| |||| ||| || || || || | || Sbjct 5893 TATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCAT 5834 Query 135602 TTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTAT 135661 || ||||| ||||||||||| |||||| ||||||||||| |||| || || ||||||||| Sbjct 5833 TTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTAT 5774 Query 135662 CAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAA 135721 ||||| | || | |||||| | | ||||| | ||||||||||| ||||||||| Sbjct 5773 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAA 5714 Query 135722 CTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCC 135774 || || || ||||||||||| ||||||||| ||| || || ||||| || Sbjct 5713 CTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq78999 Length=659 Score = 123 bits (136), Expect = 3e-23 Identities = 215/310 (69%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 138568 CTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACT 138627 |||| || | ||||| |||||||| ||||||| ||||| ||||| | | | Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-T 265 Query 138628 TCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTC 138687 ||| |||| | ||||| || || | ||| | ||| | || | |||| | || || Sbjct 264 TCTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205 Query 138688 TTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATC 138747 | || || |||||||| || ||||| || || || |||||||||||| ||||||||||| Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145 Query 138748 CTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGA 138807 || ||| ||||| ||||||||||| | ||| | | || |||||| | |||| |||| Sbjct 144 CT-TATTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86 Query 138808 TGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAG 138867 ||| | ||| | | ||| |||||| || | || || |||| || | ||| | Sbjct 85 TGGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATG 26 Query 138868 GCAACGCTCT 138877 | ||| |||| Sbjct 25 GAAACACTCT 16 >seq13836 Length=10167 Score = 107 bits (118), Expect = 2e-18 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 138144 GGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTT 138203 || || || ||||||||||| || |||||||| || || | | || || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 138204 CGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTC 138260 || || ||||| | |||| |||| | || | || || || || |||| ||||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTT---CAATTGCGACCTTATAATGCAACCGCATTC 4586 Query 138261 TCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGT 138320 || ||||| || ||||| || || || ||||| || ||||| ||||||| || || Sbjct 4587 TCAGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGT 4646 Query 138321 TGGTTCTTTGCTCC 138334 |||||||||||||| Sbjct 4647 TGGTTCTTTGCTCC 4660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626209414864000