Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 226 8e-55
seq95291 201 3e-47
>seq80997
Length=4773
Score = 226 bits (250), Expect = 8e-55
Identities = 260/350 (74%), Gaps = 0/350 (0%)
Strand=Plus/Plus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|| ||| | ||| | || || ||||| || || ||||| | || |||||||| || |
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||||||| ||| | |||| ||| || ||||| |||| |||||||| || ||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 4455
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
|| |||||||| ||||| || |||||||| ||||| || || || | || |||||||||
Sbjct 4456 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAAT 4515
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
|| |||||||| || | |||| | || || ||||| |||| ||||||||||||
Sbjct 4516 ATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 4575
Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589
|||||||| | || | |||||||||||||||||||||||||| ||| |||| ||||
Sbjct 4576 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 4635
Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACT 19639
| ||||||||| | || ||||| ||| ||| | ||||||||||
Sbjct 4636 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 4685
>seq95291
Length=6073
Score = 201 bits (222), Expect = 3e-47
Identities = 285/401 (71%), Gaps = 0/401 (0%)
Strand=Plus/Minus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|| ||| | ||| | || | | ||| || || ||||| | || ||||||| || |
Sbjct 6061 TTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTTG 6002
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||||||| ||| | |||| | | || ||||| |||| |||||||| || ||
Sbjct 6001 ATGATTCCTACTTTATTGACTGCAAATTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 5942
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
|| |||||||| ||||| || ||||||| ||||| || || || | || |||||||||
Sbjct 5941 CCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAAT 5882
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
|| |||| ||| || | |||| | || || ||||| |||| ||||||||||||
Sbjct 5881 ATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 5822
Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589
|||||||| | || | |||||||||||||||||||||||||| ||| |||| ||||
Sbjct 5821 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 5762
Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649
| ||||||||| | || ||||| ||| ||| | |||||||||| || |
Sbjct 5761 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 5702
Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACC 19690
| || ||| | || ||||| || |||||| |||| ||
Sbjct 5701 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144057325310460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |