Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq80997 197 2e-45 seq95291 178 1e-39 >seq80997 Length=4773 Score = 197 bits (218), Expect = 2e-45 Identities = 286/404 (71%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 ||||| || | | | ||||| || || || ||| | || || |||||||| ||| Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 4455 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| ||||| || || || | || || ||| | || ||| | | ||||| ||||| Sbjct 4456 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAAT 4515 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 ||||| |||||||| | |||| |||| || ||||| || || || ||||| ||| Sbjct 4516 ATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 4575 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 ||||||||||| || | || |||||||| |||||||| |||||||| | || || || Sbjct 4576 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 4635 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | |||||| | |||| | || |||||||||| | |||||||||| | | Sbjct 4636 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 4695 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT 171069 || || ||| | |||||||| ||| ||||| | ||| | ||| Sbjct 4696 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGT 4739 >seq95291 Length=6073 Score = 178 bits (196), Expect = 1e-39 Identities = 280/401 (70%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| || || ||||| | ||| |||| ||||||| ||| || Sbjct 6061 TTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTTG 6002 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 ||||| || | | | ||||| | || || ||| | || || |||||||| ||| Sbjct 6001 ATGATTCCTACTTTATTGACTGCAAATTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 5942 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| ||||| || || || | || | ||| | || ||| | | ||||| ||||| Sbjct 5941 CCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAAT 5882 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 ||||| | |||||| | |||| |||| || ||||| || || || ||||| ||| Sbjct 5881 ATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 5822 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 ||||||||||| || | || |||||||| |||||||| |||||||| | || || || Sbjct 5821 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 5762 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | |||||| | |||| | || |||||||||| | |||||||||| | | Sbjct 5761 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 5702 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACC 171066 || || ||| | |||||||| ||| ||||| ||||| || Sbjct 5701 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568671797867400