Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq205188 150 2e-31
seq222699 138 1e-27
seq15189 84.2 3e-11
seq6366 82.4 9e-11
>seq205188
Length=846
Score = 150 bits (166), Expect = 2e-31
Identities = 376/564 (67%), Gaps = 8/564 (1%)
Strand=Plus/Plus
Query 33319 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 33378
|| ||||||||||| | || ||||||||||| || |||||||| ||||| |||||
Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60
Query 33379 CGCTTTTTAAGCCAAAATATGGAAGCGAATG-ATCCAGAAAAGAAGATTCCTTCTACTGC 33437
|| || || ||||| || |||| ||| || | ||| || ||||||||||| || || ||
Sbjct 61 CGTTTCTTGAGCCAGAAGATGG-AGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAAC-GC 118
Query 33438 A-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 33496
| ||||| || | | | ||| | | | || | ||||| | ||||
Sbjct 119 AGGCAAATGCGACGATGCGCTCGGCGAAGGAGTCGGAAGAGTCGATCCAGCGGAGGGCCC 178
Query 33497 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 33556
| | ||||||||| | ||||| || || || || ||||| | ||||||| | |||| |
Sbjct 179 AGTTGGCCTTCTTGGTGACACAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCT 238
Query 33557 CATTAC--TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614
| ||| ||||| | || || |||| | || || ||||| || || ||||||||
Sbjct 239 C--TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTT 296
Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674
|| ||||| ||||| || ||||| || | ||||||| | ||| || || |
Sbjct 297 CTCGATGGCGATCTGGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCAT 356
Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734
||| || | || | ||||| || || ||||| ||| || || || || | ||
Sbjct 357 AAAACGGCCGGCGAGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGGAC 416
Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 33794
|| | || |||| ||| | || || | ||||||| |||| || | |||
Sbjct 417 GTGGGTGATGAAATGGCGCTCGCCGTCGGTGAGAGTGTTCCAATGGCTGATGTCCTGAGA 476
Query 33795 TATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
| ||| || || ||| | ||||| || || || ||||| || || ||||| | ||||||
Sbjct 477 GAGATCGACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTGTACATTTCCCAGAT 536
Query 33855 GTCATAATATTGGATTGGGAAAAT 33878
| |||||||| ||||| ||
Sbjct 537 TTGGGGGTATTGGATAGGGAACAT 560
>seq222699
Length=2956
Score = 138 bits (152), Expect = 1e-27
Identities = 244/353 (69%), Gaps = 2/353 (1%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| |||||||| || || || |||| || ||||||||||| || |||||
Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| | ||| ||||| || ||||||||||| || ||| || || ||||||
Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAG 550
Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33482
||||| || || ||| || ||||| | || | ||| || | | || || ||| ||
Sbjct 549 ATTCCCTCGAC-GCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491
Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542
||| ||||| | ||||||||| ||||| || || || |||| ||| ||
Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431
Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602
|| | || ||||| | ||||| | || || || | | ||||| ||||| ||
Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371
Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655
|| || ||||| || ||||| ||||| || ||||||||| | |||||||
Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGG 318
>seq15189
Length=5727
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
|||||||||||| | || |||| | || || || || |||||| || |||| ||
Sbjct 2543 TTCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACC 2484
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229
||| ||||| || || | ||| ||||| | || | || |||| || ||||||
Sbjct 2483 CGGAGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAA 2424
Query 63230 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280
||||||||| | ||||||||| ||| ||||||| | | |||||||||
Sbjct 2423 GAGATCAGGCACCCAAAGAGCATAAAACAGATCTCGCGCACGATGTTCCTC 2373
>seq6366
Length=10312
Score = 82.4 bits (90), Expect = 9e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472
||||||||||| |||||| |||||| | ||||| || | ||| || || || ||||
Sbjct 181 CAACATTGGAAAAATACCATTTGATGTCCCATTTGTGCAACGGATGTAACTACCCGTGGC 240
Query 63473 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532
||||||||| || || | ||| ||||| || || ||| || | || ||
Sbjct 241 ACGAATATTGTGAACAGAAACACCAATTCCACCAGCTGATTTGCTAATGATAGCACACTC 300
Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575
|| || |||||||| || |||||||| |||||||| |||||
Sbjct 301 CTTCAAAGTGTCATATATTCCCTCTATACTATCATCTTTCATG 343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621202675300600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |