Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq39107 107 2e-18 seq44648 93.3 4e-14 >seq39107 Length=55737 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || ||||| || | |||||| | ||| ||||||| Sbjct 40934 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTAGAATCGTCT 40993 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| |||||||| || || ||||| |||||| Sbjct 40994 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAA 41053 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| | |||| | || ||||||||||| |||| |||| | | ||| || || Sbjct 41054 CAAAGGTTAATTTTTGCTGGTAAACAACTCGAGGATGGGAGAACCCTTGCCGATTACAAT 41113 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || |||| |||| || Sbjct 41114 ATTCAGAAGGAGTCCACGCTCCACTTGGTGCT 41145 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || || |||||| | |||||| | || | ||||| Sbjct 26097 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTGGAGGTGGAATCCTCT 26156 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || || ||||| ||||||||||| || ||||| ||||| Sbjct 26157 GATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 26216 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| || || |||||||| || || | |||| | | || || ||| Sbjct 26217 CAGAGGTTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAAC 26276 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || || |||| |||| || Sbjct 26277 ATTCAAAAGGAGTCCACGCTCCACTTGGTGCT 26308 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || || |||||| | |||||| | || | ||||| Sbjct 29420 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTGGAGGTGGAATCCTCT 29479 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || || ||||| ||||||||||| || ||||| ||||| Sbjct 29480 GATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 29539 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| || || |||||||| || || | |||| | | || || ||| Sbjct 29540 CAGAGGTTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAAC 29599 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || || |||| |||| || Sbjct 29600 ATTCAAAAGGAGTCCACGCTCCACTTGGTGCT 29631 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || || |||||| | |||||| | || | ||||| Sbjct 46351 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTGGAGGTGGAATCCTCT 46410 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || || ||||| ||||||||||| || ||||| ||||| Sbjct 46411 GATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 46470 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| || || |||||||| || || | |||| | | || || ||| Sbjct 46471 CAGAGGTTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAAC 46530 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || || |||| |||| || Sbjct 46531 ATTCAAAAGGAGTCCACGCTCCACTTGGTGCT 46562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCA 26825 ||||||| | |||||||| || || || ||||| | || || | ||| | ||| | Sbjct 43770 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 43829 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || || || || | || ||| ||||||| || || || || || || || ||| Sbjct 43830 A--GATACAATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGAT 43887 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | | ||| ||||| || ||||||| |||| | | || || Sbjct 43888 CAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTAC 43947 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || ||||||||||| | || ||||| |||| ||| | || |||| Sbjct 43948 AACATCCAGAAAGAATCTACCCTGCACCTGGTTTTGAGGCTTCGTGGTGGAA 43999 >seq44648 Length=6574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | |||||||| | |||||| | || | ||| Sbjct 5083 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 5142 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || |||||| ||||| || || || || || || || Sbjct 5143 GACACCATAGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAG 5202 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | | ||| || ||||| ||||||| ||| | | || |||||| Sbjct 5203 CAGAGGCTCATATTTGCCGGAAAGCAACTAGAAGATGGCCGAACCTTGGCAGATTATAAC 5262 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| ||||| || ||| ||||||| ||| || |||| | || |||| Sbjct 5263 ATTCAGAAAGAGTCAACTCTCCATCTTGTCTTGCGACTCCGTGGTGGAA 5311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477321935865200