Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15189 107 5e-18 seq91905 100 7e-16 seq88322 84.2 6e-11 >seq15189 Length=5727 Score = 107 bits (118), Expect = 5e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| ||| ||||| || | ||| || | ||| | Sbjct 1866 TTGCTTCCTTGTGTGCATGAACGATGATAGCATAGAGGGGATATATGAAACTTTGAAGGA 1925 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | ||| ||| || || ||||||||||| || ||||||| ||||||| Sbjct 1926 GTGTGCTATCATTAGCAAATCAGCTGGAGGAATTGGTGTGTCTGTCCACAACATTCGTGC 1985 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || |||||| ||||| || ||| || || || || | ||||| ||| | || Sbjct 1986 TAAGGGCAGTTATATTCGTGGGACAAATGGGACGTCCAACGGCATTGTTCCAATGTTACG 2045 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||| | ||||||| | || || |||||||| ||||| ||| | ||||| Sbjct 2046 TGTGTTCAATGATACTGCCCGCTATGTTGACCAGGGGGGAGGCAAGAGGAAAGG 2099 >seq91905 Length=5598 Score = 100 bits (110), Expect = 7e-16 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 111702 CAGTTTTATGTA-CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| ||| ||||| | | ||||| |||||||||||||||||||| || || Sbjct 4007 CAGTTTTATGTATCAC-ACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCGGACAT 4065 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || || |||| |||||||||||| ||| || || || || ||| | || ||||| Sbjct 4066 GGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTCTGACATGCATGATTGCTCA 4125 Query 111821 TTTT 111824 | || Sbjct 4126 TGTT 4129 >seq88322 Length=2502 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 363694 GGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGG 363753 ||||||||||| || ||||||| ||||||| || |||||| ||||| || ||| Sbjct 1198 GGAATTGGTGTGTCTGTCCACAACATTCGTGCTAAGGGCAGTTATATTCGTGGGACAAAT 1257 Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 || || || || | ||||| ||| | |||||||| | ||||||| | || || Sbjct 1258 GGGACGTCCAACGGCATTGTTCCAATGTTACGTGTGTTCAATGATACTGCCCGCTATGTT 1317 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||||| ||||| ||| | ||||| Sbjct 1318 GACCAGGGGGGAGGCAAGAGGAAAGG 1343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299612390695370