Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq39107 111 1e-19 seq44648 105 6e-18 seq158136 96.9 3e-15 >seq39107 Length=55737 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG--GAGTCC 115342 ||||||||||||||| || ||| | || ||||| ||||| || | ||| | |||| | Sbjct 43770 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 43829 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || ||| | ||||| || ||| ||| ||| ||||| || || ||||| || Sbjct 43830 AGATACA---ATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGA 43886 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| || ||||| | ||| || ||||| | ||||||| | |||| | || ||||| Sbjct 43887 TCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTA 43946 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| || ||||| ||||| | || |||| ||||| | || || |||| Sbjct 43947 CAACATCCAGAAAGAATCTACCCTGCACCTGGTTTTGAGGCTTCGTGGTGGAA 43999 Score = 105 bits (116), Expect = 6e-18 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG--GAGTCC 115342 ||||||||||||||| || ||| | || ||||| ||||| || | ||| | |||| | Sbjct 48780 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 48839 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || ||| | ||||| || ||| ||| ||| ||||| || || ||||| || Sbjct 48840 AGATACA---ATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGA 48896 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| || ||||| | ||| || ||||| | ||||||| | ||| | || ||||| Sbjct 48897 TCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCGGATTA 48956 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| || ||||| ||||| | || |||| ||||| | || || |||| Sbjct 48957 CAACATCCAGAAAGAATCTACCCTGCACCTGGTTTTGAGGCTTCGTGGTGGAA 49009 Score = 105 bits (116), Expect = 6e-18 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG--GAGTCC 115342 ||||||||||||||| || ||| | || ||||| ||||| || | ||| | |||| | Sbjct 50043 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATAACTTTGGAAGTGGAGAGTTC 50102 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || ||| | ||||| || ||| ||| ||| ||||| || || ||||| || Sbjct 50103 AGATACA---ATTGACAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGA 50159 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| || ||||| | ||| || ||||| | ||||||| | ||| | || ||||| Sbjct 50160 TCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCGGATTA 50219 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| || ||||| ||||| | || |||| ||||| | || || |||| Sbjct 50220 CAACATCCAGAAAGAATCTACCCTGCACCTGGTTTTGAGGCTTCGTGGTGGAA 50272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 |||||||| ||||| || || | || || ||||| |||||| | || |||| | || Sbjct 46579 ATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 46638 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || ||| | || ||| || ||| ||||| || || | ||| || | Sbjct 46639 G--ATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACC 46696 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||| | ||| || ||||| | ||||||| | |||| | || ||||||| Sbjct 46697 AGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATA 46756 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| || ||||| ||||| | || |||| ||||| | || || |||| Sbjct 46757 ACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGGAA 46807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 |||||||| ||||| || || | || || ||||| |||||| | || |||| | || Sbjct 16551 ATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 16610 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || ||| | || ||| || ||| ||||| || || | ||| || | Sbjct 16611 G--ATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACC 16668 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||| | ||| || ||||| | ||||||| | |||| | || ||||||| Sbjct 16669 AGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATA 16728 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||| || ||||| ||||| | || |||| ||||| Sbjct 16729 ACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 16765 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 |||||||| ||||| || || | || || ||||| |||||| | || |||| | || Sbjct 26325 ATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 26384 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || ||| | || ||| || ||| ||||| || || | ||| || | Sbjct 26385 G--ATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACC 26442 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||| | ||| || ||||| | ||||||| | |||| | || ||||||| Sbjct 26443 AGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATA 26502 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||| || ||||| ||||| | || |||| ||||| Sbjct 26503 ACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 26539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 |||||||| ||||| || || | || || ||||| |||||| | || |||| | || Sbjct 29648 ATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 29707 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || ||| | || ||| || ||| ||||| || || | ||| || | Sbjct 29708 G--ATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACC 29765 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||| | ||| || ||||| | ||||||| | |||| | || ||||||| Sbjct 29766 AGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATA 29825 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||| || ||||| ||||| | || |||| ||||| Sbjct 29826 ACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 29862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| |||||||| || | || || || ||||||||| | || || |||| || Sbjct 41162 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTCGAGAGTTCA 41221 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || ||| | || ||| || ||| ||||| || || | ||| || | Sbjct 41222 G--ATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACC 41279 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||| | || || ||||| | ||||||| | |||| | || ||||||| Sbjct 41280 AGCAGAGGCTTATCTTCGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATA 41339 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||| || ||||| ||||| | || |||| ||||| Sbjct 41340 ACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 41376 >seq44648 Length=6574 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| ||||| ||||| ||| | || ||| | Sbjct 5083 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 5142 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || || ||| || || || || |||| || || Sbjct 5143 GACACCATAG-ACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 5201 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || || ||| ||||||||| | |||| |||| |||||||| Sbjct 5202 GCAGAGGCTCATATTTGCCGGAAAGCAACTAGAAGATGGCCGAACCTTGGCAGATTATAA 5261 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||| |||||||| ||| | ||| | || ||| || | || || |||| Sbjct 5262 CATTCAGAAAGAGTCAACTCTCCATCTTGTCTTGCGACTCCGTGGTGGAA 5311 >seq158136 Length=352 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || | |||||||| || || || | ||| ||| | Sbjct 20 AATGCAAATCTTTGTGAAGACATTGACGGGAAAGACAATCACTCTTGAAGTGGAAAGCTC 79 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || || ||| || ||||| || |||| || | Sbjct 80 TGACACCATTG-ACAATGTCAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACC 138 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| || |||| ||| || ||||| | || |||| | |||| | |||||||| | Sbjct 139 AGCAAAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGAACCCTTGCCGATTACA 198 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||| ||||||||||| | ||| ||||| Sbjct 199 ACATTCAGAAAGAGTCTACCCTGCATTTGGTG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424182629444200