Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq222699 120 4e-22
seq6366 87.8 2e-12
seq15189 86.0 8e-12
>seq222699
Length=2956
Score = 120 bits (132), Expect = 4e-22
Identities = 242/354 (68%), Gaps = 4/354 (1%)
Strand=Plus/Minus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| ||||| |||||||| || || || |||| || | ||||||||| || |||||
Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779
|||||||| | ||| ||||| || ||||||||||| || ||| | | | || || |||||
Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 551
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839
||||| || || || ||||| | || | ||| || | | || || ||| ||
Sbjct 550 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491
Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899
||| ||||| | ||||||||| ||||| || || || |||| || ||
Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431
Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959
|| | || ||||| | ||||| | || || || | | ||||| ||||| ||
Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371
Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGG 33012
|| || ||||| || ||||| || || || |||||| ||||| | |||||||
Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCA-CGGGCCTCGG 318
>seq6366
Length=10312
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327
||||||||||| ||||||||| ||||| ||||| || | ||| || || || ||||
Sbjct 181 CAACATTGGAAAAATACCATTTGATGTCCCATTTGTGCAACGGATGTAACTACCCGTGGC 240
Query 63328 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387
||||||||| || || | ||| ||||| || || ||| || | || ||
Sbjct 241 ACGAATATTGTGAACAGAAACACCAATTCCACCAGCTGATTTGCTAATGATAGCACACTC 300
Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 63430
|| || || ||||| || ||||||||||||||||| |||||
Sbjct 301 CTTCAAAGTGTCATATATTCCCTCTATACTATCATCTTTCATG 343
>seq15189
Length=5727
Score = 86.0 bits (94), Expect = 8e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
||||||||||| || | || ||||| || ||||| ||||| || ||| | || | |
Sbjct 1728 GTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATCAGGTGG 1669
Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586
|| || | | ||| ||||| || || | ||||||||| || || || | ||| |||
Sbjct 1668 TAAGTTTTGACAGCAGAGTCAATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 1609
Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646
||||| || |||||||| || | ||| | | || || | |||||| | | |
Sbjct 1608 ATGTGTTGTGGTCTTTCCACAACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTTAAGG 1549
Query 63647 GTTTTAAAACCAAAATA 63663
||||| |||||||||||
Sbjct 1548 GTTTTGAAACCAAAATA 1532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631857553186000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |