Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq222699 120 4e-22 seq6366 87.8 2e-12 seq15189 86.0 8e-12 >seq222699 Length=2956 Score = 120 bits (132), Expect = 4e-22 Identities = 242/354 (68%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || || || |||| || | ||||||||| || ||||| Sbjct 669 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGG 610 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| | ||| ||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 609 CCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 551 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 ||||| || || || ||||| | || | ||| || | | || || ||| || Sbjct 550 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGGTGGCATCGAT 491 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| ||||| | ||||||||| ||||| || || || |||| || || Sbjct 490 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAA 431 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 || | || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 430 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 371 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGG 33012 || || ||||| || ||||| || || || |||||| ||||| | ||||||| Sbjct 370 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCA-CGGGCCTCGG 318 >seq6366 Length=10312 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327 ||||||||||| ||||||||| ||||| ||||| || | ||| || || || |||| Sbjct 181 CAACATTGGAAAAATACCATTTGATGTCCCATTTGTGCAACGGATGTAACTACCCGTGGC 240 Query 63328 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387 ||||||||| || || | ||| ||||| || || ||| || | || || Sbjct 241 ACGAATATTGTGAACAGAAACACCAATTCCACCAGCTGATTTGCTAATGATAGCACACTC 300 Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 63430 || || || ||||| || ||||||||||||||||| ||||| Sbjct 301 CTTCAAAGTGTCATATATTCCCTCTATACTATCATCTTTCATG 343 >seq15189 Length=5727 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||||||||| || | || ||||| || ||||| ||||| || ||| | || | | Sbjct 1728 GTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATCAGGTGG 1669 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | | ||| ||||| || || | ||||||||| || || || | ||| ||| Sbjct 1668 TAAGTTTTGACAGCAGAGTCAATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 1609 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| || |||||||| || | ||| | | || || | |||||| | | | Sbjct 1608 ATGTGTTGTGGTCTTTCCACAACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTTAAGG 1549 Query 63647 GTTTTAAAACCAAAATA 63663 ||||| ||||||||||| Sbjct 1548 GTTTTGAAACCAAAATA 1532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631857553186000