Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 223 4e-53
seq95291 188 8e-43
seq78999 109 6e-19
seq13836 102 9e-17
>seq80997
Length=4773
Score = 223 bits (246), Expect = 4e-53
Identities = 315/440 (72%), Gaps = 2/440 (0%)
Strand=Plus/Plus
Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112
|||||| | ||| | ||| ||| | || |||||||| |||| |||||||| |
Sbjct 4335 CTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 4394
Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171
||||||||| ||| | ||| | ||||| ||||| || || ||||||| | || || |
Sbjct 4395 GATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 4453
Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231
|||| || ||||| ||||| || |||||||| || | || |||||| | ||||| ||||
Sbjct 4454 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 4513
Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291
| ||||| |||||||| || | || | || || || ||| | || || ||||| |
Sbjct 4514 ATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 4573
Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351
||||||||||||| || ||||||| ||| | || ||||| ||||||| | || | |
Sbjct 4574 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 4633
Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACC 166411
| | |||||| | | || | | ||||||||||||||| |||||| | || |
Sbjct 4634 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC 4693
Query 166412 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 166471
| || |||||||||||||||||| || ||||| | || | ||||| ||| || |
Sbjct 4694 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTA 4753
Query 166472 CAGTCTTCCTGGTCTATCCT 166491
| || ||| || ||||||||
Sbjct 4754 CTGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 188 bits (208), Expect = 8e-43
Identities = 285/403 (71%), Gaps = 2/403 (0%)
Strand=Plus/Minus
Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112
|||||| | ||| | ||| | | | || |||||||| |||| ||||||| |
Sbjct 6062 CTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTT 6003
Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171
||||||||| ||| | ||| | |||| ||||| || || ||||||| | || || |
Sbjct 6002 GATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 5944
Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231
|||| || ||||| ||||| || ||||||| || | || |||||| | ||||| ||||
Sbjct 5943 CTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACA 5884
Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291
| ||||| | |||||| || | || | || || || ||| | || || ||||| |
Sbjct 5883 ATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 5824
Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351
||||||||||||| || ||||||| ||| | || ||||| ||||||| | || | |
Sbjct 5823 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 5764
Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACC 166411
| | |||||| | | || | | ||||||||||||||| |||||| | || |
Sbjct 5763 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC 5704
Query 166412 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACC 166454
| || |||||||||||||||||| || ||||| || || ||
Sbjct 5703 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
>seq78999
Length=659
Score = 109 bits (120), Expect = 6e-19
Identities = 214/312 (69%), Gaps = 6/312 (2%)
Strand=Plus/Minus
Query 168003 CTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACT 168062
|||| || || ||||| |||| ||| |||||||| |||||| ||||||| | |
Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-T 265
Query 168063 TCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTC 168122
||| |||| | || || || || | || | ||| | | || |||| | | ||
Sbjct 264 TCTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205
Query 168123 TCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATC 168182
| || || || || ||||||||||||||||| ||| | ||| || | | |||||| ||||
Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145
Query 168183 CAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGA 168242
| | ||||| |||||||| || |||| || || | || ||||| | |||| ||||
Sbjct 144 CTTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86
Query 168243 TGG--CTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAG 168300
||| | || ||| | | ||||||||| || ||||| | |||| || | |||
Sbjct 85 TGGGAGTTCA--AGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACA 28
Query 168301 AGGCAACGCTCT 168312
|| ||| ||||
Sbjct 27 TGGAAACACTCT 16
>seq13836
Length=10167
Score = 102 bits (112), Expect = 9e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 167569 GTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGG 167628
||| ||| | || || || ||| ||||||| || |||||||| || || | | |||||
Sbjct 4460 GTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGG 4519
Query 167629 ATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGAT 167688
|| ||| | || |||||||| | | || || | || ||||| ||||| |
Sbjct 4520 GTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAC 4579
Query 167689 TGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACA 167748
|| || || ||||| |||||||| ||||| | ||| || || || ||||| || || ||
Sbjct 4580 CGCATTCTCAGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCA 4639
Query 167749 GTCCAGTTGGTTCTTTGCACC 167769
||| ||||||||||||| ||
Sbjct 4640 GTCTGGTTGGTTCTTTGCTCC 4660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565643502236000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |