Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq205188 127 2e-24 seq82625 91.5 2e-13 seq43026 87.8 2e-12 >seq205188 Length=846 Score = 127 bits (140), Expect = 2e-24 Identities = 379/579 (65%), Gaps = 7/579 (1%) Strand=Plus/Plus Query 93112 ACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTT 93171 ||| ||||| || || || | || ||| ||| || | ||||| | || || ||||| Sbjct 6 ACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCCCGTTT 65 Query 93172 CTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 ||||||||| || || || |||||| || || || || || || || || ||| |||| Sbjct 66 CTTGAGCCAGAAGATGGA-GCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAGGCAA 124 Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 |||| || || || ||||| || ||||| | |||||| | ||||| | Sbjct 125 ATGCGACGATGCGCTCGGCGAAGGAGTCGGAAGA---GTCGATCCAGCGGAGGGCCCAGT 181 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGT 93350 ||| || || | | ||| || | || || || |||| ||| || | ||| Sbjct 182 TGGCCTTCTTGGTGACACAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCTCTA 241 Query 93351 CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCA 93410 | || ||| |||||| || |||| | || ||||| || || || | ||||| | Sbjct 242 CGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGA 301 Query 93411 TTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAAT 93469 | || || ||||| ||||| || | || || | || ||| || || || | |||| Sbjct 302 TGGCGATCTGGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCATAAAAC 361 Query 93470 CTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGC 93529 | | |||| ||||| || || || ||||| || || || || || | | || Sbjct 362 GGC-CGGCGAGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGGACGTGG 420 Query 93530 TTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 | || ||||| ||| | || | || | | ||||| | | || | || ||| Sbjct 421 GTGATGAAATGGCGCTCGCCGTCGGTGAGAGTGTTCCAATGGCTGATGTCCTGAGAGAGA 480 Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 ||||| || || | ||||| ||||| ||||||||||| |||||||| ||||| || | Sbjct 481 TCGACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTGTACATTTCCCAGATTTGG 540 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 | ||||| || || || ||| ||||||| ||||||| Sbjct 541 GGGTATTGGATAGGGAACATGCAGAAACGATCAGGGTTA 579 >seq82625 Length=9734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || ||| | || Sbjct 1480 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTATCGAGGGC 1539 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| |||||| ||||| Sbjct 1540 GTGGGTTCAAATCCCACTTCTGACACTTTATT 1571 >seq43026 Length=10785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/106 (79%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 561 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 620 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| |||||| || || || ||||| ||| Sbjct 621 TGGGTTCAAATCCCACTTCTGACATTTTTTTTTT---ATTTTCGTT 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555301346133400