Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq205188 127 2e-24
seq82625 91.5 2e-13
seq43026 87.8 2e-12
>seq205188
Length=846
Score = 127 bits (140), Expect = 2e-24
Identities = 379/579 (65%), Gaps = 7/579 (1%)
Strand=Plus/Plus
Query 93112 ACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTT 93171
||| ||||| || || || | || ||| ||| || | ||||| | || || |||||
Sbjct 6 ACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCCCGTTT 65
Query 93172 CTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230
||||||||| || || || |||||| || || || || || || || || ||| ||||
Sbjct 66 CTTGAGCCAGAAGATGGA-GCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAGGCAA 124
Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290
|||| || || || ||||| || ||||| | |||||| | ||||| |
Sbjct 125 ATGCGACGATGCGCTCGGCGAAGGAGTCGGAAGA---GTCGATCCAGCGGAGGGCCCAGT 181
Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGT 93350
||| || || | | ||| || | || || || |||| ||| || | |||
Sbjct 182 TGGCCTTCTTGGTGACACAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCTCTA 241
Query 93351 CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCA 93410
| || ||| |||||| || |||| | || ||||| || || || | ||||| |
Sbjct 242 CGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGA 301
Query 93411 TTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAAT 93469
| || || ||||| ||||| || | || || | || ||| || || || | ||||
Sbjct 302 TGGCGATCTGGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCATAAAAC 361
Query 93470 CTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGC 93529
| | |||| ||||| || || || ||||| || || || || || | | ||
Sbjct 362 GGC-CGGCGAGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGGACGTGG 420
Query 93530 TTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589
| || ||||| ||| | || | || | | ||||| | | || | || |||
Sbjct 421 GTGATGAAATGGCGCTCGCCGTCGGTGAGAGTGTTCCAATGGCTGATGTCCTGAGAGAGA 480
Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649
||||| || || | ||||| ||||| ||||||||||| |||||||| ||||| || |
Sbjct 481 TCGACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTGTACATTTCCCAGATTTGG 540
Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688
| ||||| || || || ||| ||||||| |||||||
Sbjct 541 GGGTATTGGATAGGGAACATGCAGAAACGATCAGGGTTA 579
>seq82625
Length=9734
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/92 (83%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| || ||| | ||
Sbjct 1480 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTATCGAGGGC 1539
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||| || ||||| |||||| |||||
Sbjct 1540 GTGGGTTCAAATCCCACTTCTGACACTTTATT 1571
>seq43026
Length=10785
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/106 (79%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 561 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 620
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||||||| || ||||| |||||| || || || ||||| |||
Sbjct 621 TGGGTTCAAATCCCACTTCTGACATTTTTTTTTT---ATTTTCGTT 663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555301346133400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |