Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq39107 86.0 5e-12 seq44648 82.4 6e-11 >seq39107 Length=55737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/241 (68%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || || || || || || || ||| ||||||||||||||||| || Sbjct 27011 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 26952 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||||| || | || |||||||| || || ||||| || || | ||||||||| Sbjct 26951 TGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 26892 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | || ||| |||||| | | | ||||||| ||||| ||||| | | || Sbjct 26891 TGGAATGCCCTCCTTGTCC-TGAATCTTTGCTT--------TCACATTATCAATTGTATC 26841 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || || || ||||| || || || |||||||| || ||||| Sbjct 26840 AGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 26781 Query 34128 T 34128 | Sbjct 26780 T 26780 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/241 (68%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || || || || || || || ||| ||||||||||||||||| || Sbjct 41848 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 41789 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||||| || | || |||||||| || || ||||| || || | ||||||||| Sbjct 41788 TGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 41729 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | || ||| |||||| | | | ||||||| ||||| ||||| | | || Sbjct 41728 TGGAATGCCCTCCTTGTCC-TGAATCTTTGCTT--------TCACATTATCAATTGTATC 41678 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || || || ||||| || || || |||||||| || ||||| Sbjct 41677 AGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 41618 Query 34128 T 34128 | Sbjct 41617 T 41617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || ||||||| || |||||| |||||||||||| |||||||| | | Sbjct 48551 CCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATC-GGC 48493 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || |||| ||| || || ||||| || || | |||||||||| || Sbjct 48492 AAGGGTCCTTCCATCCTCCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGG 48433 Query 34020 CACGCTCTCTTTGTC 34034 | || ||||||||| Sbjct 48432 GATGCCCTCTTTGTC 48418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || ||||||| || |||||| |||||||||||| |||||||| | | Sbjct 49814 CCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATC-GGC 49756 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || |||| ||| || || ||||| || || | |||||||||| || Sbjct 49755 AAGGGTCCTTCCATCCTCCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGG 49696 Query 34020 CACGCTCTCTTTGTC 34034 | || ||||||||| Sbjct 49695 GATGCCCTCTTTGTC 49681 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/241 (68%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || || || || || || || ||| ||||||||||||||||| || Sbjct 30334 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 30275 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||||| || | || |||||||| || || ||||| || || | ||||||||| Sbjct 30274 TGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 30215 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | || ||| |||| | | | | ||||||| ||||| ||||| | | || Sbjct 30214 TGGAATGCCCTCCTTGT-CTTGAATCTTTGCTT--------TCACATTATCAATTGTATC 30164 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || || || ||||| || || || |||||||| || ||||| Sbjct 30163 AGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 30104 Query 34128 T 34128 | Sbjct 30103 T 30103 >seq44648 Length=6574 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || || || |||||||| ||| ||||||||||||||||||||| ||| Sbjct 5537 CCTCCCCTCAGGCGAAGGACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 5478 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | ||||| || ||||| |||| | |||||||| || Sbjct 5477 AGAGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAGGA 5418 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 5417 ATGCCCTCCTTGTCC 5403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395978250276070