Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq39107 86.0 5e-12
seq44648 82.4 6e-11
>seq39107
Length=55737
Score = 86.0 bits (94), Expect = 5e-12
Identities = 164/241 (68%), Gaps = 18/241 (7%)
Strand=Plus/Minus
Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956
||| || || | || || || || || || || ||| ||||||||||||||||| ||
Sbjct 27011 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 26952
Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016
|||||| || | || |||||||| || || ||||| || || | |||||||||
Sbjct 26951 TGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 26892
Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076
|| | || ||| |||||| | | | ||||||| ||||| ||||| | | ||
Sbjct 26891 TGGAATGCCCTCCTTGTCC-TGAATCTTTGCTT--------TCACATTATCAATTGTATC 26841
Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || ||| || || || ||||| || || || |||||||| || |||||
Sbjct 26840 AGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 26781
Query 34128 T 34128
|
Sbjct 26780 T 26780
Score = 86.0 bits (94), Expect = 5e-12
Identities = 164/241 (68%), Gaps = 18/241 (7%)
Strand=Plus/Minus
Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956
||| || || | || || || || || || || ||| ||||||||||||||||| ||
Sbjct 41848 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 41789
Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016
|||||| || | || |||||||| || || ||||| || || | |||||||||
Sbjct 41788 TGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 41729
Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076
|| | || ||| |||||| | | | ||||||| ||||| ||||| | | ||
Sbjct 41728 TGGAATGCCCTCCTTGTCC-TGAATCTTTGCTT--------TCACATTATCAATTGTATC 41678
Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || ||| || || || ||||| || || || |||||||| || |||||
Sbjct 41677 AGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 41618
Query 34128 T 34128
|
Sbjct 41617 T 41617
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || |||| || ||||||| || |||||| |||||||||||| |||||||| | |
Sbjct 48551 CCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATC-GGC 48493
Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| | | || |||| ||| || || ||||| || || | |||||||||| ||
Sbjct 48492 AAGGGTCCTTCCATCCTCCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGG 48433
Query 34020 CACGCTCTCTTTGTC 34034
| || |||||||||
Sbjct 48432 GATGCCCTCTTTGTC 48418
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || |||| || ||||||| || |||||| |||||||||||| |||||||| | |
Sbjct 49814 CCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATC-GGC 49756
Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| | | || |||| ||| || || ||||| || || | |||||||||| ||
Sbjct 49755 AAGGGTCCTTCCATCCTCCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGG 49696
Query 34020 CACGCTCTCTTTGTC 34034
| || |||||||||
Sbjct 49695 GATGCCCTCTTTGTC 49681
Score = 82.4 bits (90), Expect = 6e-11
Identities = 163/241 (68%), Gaps = 18/241 (7%)
Strand=Plus/Minus
Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956
||| || || | || || || || || || || ||| ||||||||||||||||| ||
Sbjct 30334 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 30275
Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016
|||||| || | || |||||||| || || ||||| || || | |||||||||
Sbjct 30274 TGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 30215
Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076
|| | || ||| |||| | | | | ||||||| ||||| ||||| | | ||
Sbjct 30214 TGGAATGCCCTCCTTGT-CTTGAATCTTTGCTT--------TCACATTATCAATTGTATC 30164
Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || ||| || || || ||||| || || || |||||||| || |||||
Sbjct 30163 AGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 30104
Query 34128 T 34128
|
Sbjct 30103 T 30103
>seq44648
Length=6574
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||| || || || |||||||| ||| ||||||||||||||||||||| |||
Sbjct 5537 CCTCCCCTCAGGCGAAGGACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 5478
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || | || || | ||||| || ||||| |||| | |||||||| ||
Sbjct 5477 AGAGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAGGA 5418
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 5417 ATGCCCTCCTTGTCC 5403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395978250276070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |