Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq25874 298 2e-76 seq21506 297 6e-76 seq134086 269 8e-68 seq67776 250 7e-62 seq39539 187 7e-43 seq141262 105 2e-18 >seq25874 Length=1183 Score = 298 bits (330), Expect = 2e-76 Identities = 207/235 (88%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 41587 GAACGAGACGTTCCCGCCCGTGACCGGGGTGCCCAGGGCGTAGCAGCCGTCGGCGAGCCC 41646 |||||||||||| ||||| ||||| ||||||||||| ||||||||||||| ||||| || Sbjct 455 GAACGAGACGTTGCCGCCGGTGACGGGGGTGCCCAGCTCGTAGCAGCCGTCTGCGAGGCC 514 Query 41647 GTCCACCGTCTGACCGAACTGCCACATGACCTCGGGATTCTCCGGGGAGCCGAAGTTCAG 41706 ||| || ||||| ||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct 515 GTCGACGGTCTGCCCGAACTGCCACATGACCTCGGGGTTCTCGGGAGAGCCGAAGTTGAG 574 Query 41707 GCAGTCGGTGACCGCAGTGGGCACGGCGCCGGTGACCGCGACGTTGCGGTAGGCCTCGGC 41766 ||||||||||| || || |||||||| |||||||| ||||||||||| || |||||||| Sbjct 575 GCAGTCGGTGATGGCCGTTGGCACGGCACCGGTGACGGCGACGTTGCGATACGCCTCGGC 634 Query 41767 GAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGCTGGCAGTAGCGGCCGTTCGCG 41821 ||| |||||||| ||||| |||||||| || |||||||||||||||||||| ||| Sbjct 635 GAGCGCGAGCTGCGCGCCGGCGTACGGATCAAGCTGGCAGTAGCGGCCGTTGGCG 689 Score = 158 bits (174), Expect = 4e-34 Identities = 114/132 (86%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 42107 GTGGACGGGTCCACGTCGACGATCCGCTCTCCCTGCCAGTCGATGACGAGACGGCCGTCG 42166 || || ||||| || |||||||| ||||| |||||||||||||||| ||| || || ||| Sbjct 1047 GTCGAGGGGTCGACATCGACGATGCGCTCGCCCTGCCAGTCGATGATGAGGCGTCCATCG 1106 Query 42167 CCGGTGACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAAC 42226 ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| Sbjct 1107 CCGGTGACCTCGCCGAGCACGGAGGTCTCGACCTCCCACTTGTTCACGACGGCCAGGAAG 1166 Query 42227 GCGTCGAGCTTC 42238 |||||||||||| Sbjct 1167 GCGTCGAGCTTC 1178 Score = 109 bits (120), Expect = 2e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 41207 TCGCGCTCCATGAGCTCGGTGAGCCACACGCGCGCGCCGACGCCGAAGCGCATCACGCCC 41266 |||||||| |||| |||| ||||||| || || |||||||||||||||||||| |||||| Sbjct 3 TCGCGCTCGATGATCTCGTTGAGCCAGACCCGGGCGCCGACGCCGAAGCGCATGACGCCC 62 Query 41267 TCGGCGAGGGCCTGCGCGAG 41286 ||||| |||||||||||||| Sbjct 63 TCGGCCAGGGCCTGCGCGAG 82 >seq21506 Length=5703 Score = 297 bits (328), Expect = 6e-76 Identities = 208/237 (88%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 11033 GTGGGGAACCTCACTGCAGACCCTGAGCTGCGTTACACGCAGAACGGGCTGCCGGTGGCG 11092 ||||| |||||||| || ||||| |||||||| ||||||||||||||||||||||||||| Sbjct 5338 GTGGGCAACCTCACCGCCGACCCCGAGCTGCGCTACACGCAGAACGGGCTGCCGGTGGCG 5279 Query 11093 AACTTCACCATCGCATCGACGCCGCGCACCTTCGACCGTCAGGCGAACGAGTGGAAGGAC 11152 ||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| Sbjct 5278 AACTTCACCATCGCATCGACGCCTCGCAACTTCGACCGTGCCGCGAACGAGTGGAAGGAC 5219 Query 11153 GGCGAAGCGCTGTTCCTCCGTGCGTCCGTGTGGCGCGAGTTCGCGGAGCACGTGGCGGGT 11212 |||||||||||||||||||| || || |||||||| |||||||| |||||||||||||| Sbjct 5218 GGCGAAGCGCTGTTCCTCCGCGCCTCGGTGTGGCGTGAGTTCGCCGAGCACGTGGCGGGC 5159 Query 11213 TCGCTGACCAAGGGCATGCGGGTCATCGCATCCGGACGCCTGAAGCAGCGCTCCTAC 11269 ||||| |||||||||||||| || ||||| || || ||| ||||| |||||| Sbjct 5158 TCGCTCACCAAGGGCATGCGCGTGATCGCGCAGGGTCGTCTGCGCCAGCGTTCCTAC 5102 >seq134086 Length=262 Score = 269 bits (298), Expect = 8e-68 Identities = 175/192 (91%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42291 CCTCGGCCGTGAGCGAGGGGTCGCGGAGGAGCACGTTGTCGAGCGAGACGTGCATTCCGC 42350 ||||||||||||| | ||||||||| || |||||||||||||||||||||||||| |||| Sbjct 1 CCTCGGCCGTGAGTGTGGGGTCGCGCAGCAGCACGTTGTCGAGCGAGACGTGCATGCCGC 60 Query 42351 TGTTGCCGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAGCCCCGAGGTCCT 42410 ||||||||||||| ||||||||||| || |||||||||||||| || || |||||||||| Sbjct 61 TGTTGCCGTTGGCCGCGAGCTCGCTGGTCGCGCAGGAGATGCCGGCGGCGCCGAGGTCCT 120 Query 42411 GGATCGCCTCGACCAGCTCGTCGCGGTACAGCTCCAGGCAGCACTCGATGAGCACCTTCT 42470 ||||||||||||| || ||| ||||||| |||||||| |||||||||||||||||||||| Sbjct 121 GGATCGCCTCGACGAGTTCGCCGCGGTAGAGCTCCAGACAGCACTCGATGAGCACCTTCT 180 Query 42471 CGGCGAAGGGGT 42482 ||||||| |||| Sbjct 181 CGGCGAACGGGT 192 >seq67776 Length=997 Score = 250 bits (276), Expect = 7e-62 Identities = 279/373 (75%), Gaps = 0/373 (0%) Strand=Plus/Minus Query 44232 TGGCTGTTCTTCCCCCTCCTGACGCTAGAGGGCATCAATCTCCACGCCTTGAGCGTCCGA 44291 ||||| |||||||||||||||||||| ||||| |||| || ||| | | || | Sbjct 640 TGGCTCTTCTTCCCCCTCCTGACGCTCGAGGGGCTCAACCTGCACTACCTCGGCCTGAAG 581 Query 44292 CACCTTCTCTCCTCGCACCCGGTTCGTGGCCGCTGGCAAGAGCTGGGGATGCTCGCCGTG 44351 ||||| | | | | || || |||||| || || || | ||| | | Sbjct 580 CACCTGATGACGCGGAAGAACGTGAAGGGACGCTGGACCGAACTCGGTCTCATCGTCCTC 521 Query 44352 CGATTCTCGGCCGTGCTCGTCCCGGTGTTTCTCATGCTCCCTCTTGGCATGGCGTTCGCC 44411 || ||| | | | | ||||| ||| |||| ||| ||||||| | |||||||| ||||| Sbjct 520 CGGTTCGCCGTCCTCCTCGTGCCGCTGTTCCTCCTGCTCCCCGTCGGCATGGCCTTCGCG 461 Query 44412 TTCATGGGCGTCCAGCTCGCCGTCTTCGGCGTGTACATGGGGGCCTCGTTCGCTCCGAAC 44471 ||| ||||||| |||||||| ||||||||||| |||||||| || || ||||| || ||| Sbjct 460 TTCCTGGGCGTGCAGCTCGCGGTCTTCGGCGTCTACATGGGCGCGTCCTTCGCCCCCAAC 401 Query 44472 CACAAGGGCATGCCGATCATCGCGTCCGATGCCCGCCTCGACTTCTTCACCAAGCAGGTG 44531 ||||||||||||||| ||||||| |||| ||| |||||||||||| | ||||||||| Sbjct 400 CACAAGGGCATGCCGGTCATCGCCCCCGAGGCCAAGCTCGACTTCTTCTCGAAGCAGGTG 341 Query 44532 GGCACCTCCCGCAACATACGCGGAGGCTGGTGGGCCACCTGGCTCATGGGCGGGCTGAAC 44591 |||| || |||||||| || || || ||||||| || |||| |||||||| || ||| Sbjct 340 CGCACGTCGCGCAACATCCGTGGCGGATGGTGGGTGACGGGGCTGATGGGCGGCCTCAAC 281 Query 44592 TACCAGATCGAGC 44604 ||||| |||||| Sbjct 280 CACCAGGTCGAGC 268 Score = 232 bits (256), Expect = 2e-56 Identities = 232/308 (75%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 43929 TGGTTCCAGCTCCTTATCGCCGCCGCTCTCGGCATCCTGTTCACCCAGGTGGCTTTCCTC 43988 |||||||||||||| ||||||||||| ||||| || | ||||| ||||| || |||||| Sbjct 997 TGGTTCCAGCTCCTCATCGCCGCCGCCCTCGGGGTCGTCTTCACGCAGGTCGCCTTCCTC 938 Query 43989 GCGCACGAGGCGGCACACCGGCAGATNNNNNNNNNNNNNNNNNNNNNCCTTCGGCTCGCG 44048 || || |||||||| ||||||||||| | | || || || Sbjct 937 GCCCATGAGGCGGCGCACCGGCAGATCCTCTCCACGGGACCTGCTAACTTCCGCCTGGCC 878 Query 44049 AGGGTCCTCGGCGGGATCGTCGGCATGAGCTATTCCTGGTGGGACTCGAAGCACACGCGG 44108 | || |||| ||| ||| ||||||||||||| |||||||||||| |||||||| ||| Sbjct 877 CGCGTGCTCGCCGGCATCATCGGCATGAGCTACCACTGGTGGGACTCCAAGCACACCCGG 818 Query 44109 CACCATGGCAACCCGAATCGTGTCGGCAAGGATCCTGATATCGAGGTTGATACGATCTCG 44168 ||||| ||||||||||| | ||||||||||| || || ||| |||| || || ||||| Sbjct 817 CACCACGGCAACCCGAACCAGGTCGGCAAGGACCCCGACATCCAGGTCGACACCATCTCC 758 Query 44169 TTCCTCGACGAGGACGCCTCCCGATCGCGTGGCGTCGTCCGATTGATCACGAGGAAGCAG 44228 ||||| || ||||| || | | ||||||||| ||||||| | |||||| | |||||| Sbjct 757 TTCCTGGAGGAGGATGCGGCGCAGTCGCGTGGCATCGTCCGGCTCATCACGCGCAAGCAG 698 Query 44229 GGATGGCT 44236 || ||||| Sbjct 697 GGGTGGCT 690 Score = 134 bits (148), Expect = 4e-27 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 44621 CATGCCTCGGATCCATCTGTCCCAGGCAAGGAAGATCGTGCGCGAGCACTGCACCGCAAA 44680 |||| | ||| | || ||||| ||||| | ||||||||||| ||||| |||| || Sbjct 177 CATGTCGCGGCTGCACCTGTCGAAGGCACGCGGCATCGTGCGCGACTACTGCGCCGCCAA 118 Query 44681 CGACGTGCCGTACACCGAGACCACACTGCTTCGGTCATACGCCATCGTGATCGACTACCT 44740 || | | |||||||| ||||| | || | ||| ||||| ||||| |||| |||||| Sbjct 117 CGGCATCCCGTACACGGAGACGAGCCTCGGGCAGTCGTACGCGATCGTCATCGCCTACCT 58 Query 44741 CAACCGCGTCGGCCTGGCAGCGCGCGACCCCTTCGACTGCCC 44782 ||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 57 CAACCGCGTGGGCCTGGCGGCGCGCGACCCGTTCGACTGCCC 16 >seq39539 Length=846 Score = 187 bits (206), Expect = 7e-43 Identities = 130/148 (88%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 40991 AGCGTGGCACGCGAGGTCTCGCGCAGCTCGGCGGCGGAGACGGTGAAGACGTCCTGCACC 41050 |||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||| Sbjct 699 AGCGTGGCCTGCGAGCGCTCGCGGAGCTCGGCGGCCGAGACGGTGAAGACGTCCTGCACC 758 Query 41051 TCGAGCGTCGGCTCGCTGTCGGTCACGCCGATCCGCAGCACCGGATAGCCGCGCCCCTCG 41110 |||||| |||||||||||| || |||||||| || ||||| |||||||| |||||| Sbjct 759 TCGAGCTGCGGCTCGCTGTCCGTGACGCCGATGCGGGCGACCGGGTAGCCGCGGCCCTCG 818 Query 41111 CAGAGGCCGCGGAACTTCACGTCGTCCT 41138 ||||| |||||||||||||||||||||| Sbjct 819 CAGAGCCCGCGGAACTTCACGTCGTCCT 846 >seq141262 Length=283 Score = 105 bits (116), Expect = 2e-18 Identities = 133/179 (74%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 24806 CACCCATCGCCCCCGCACGGTCG-GGGGCTTTCT-CATGAGGAG-AGCACACACATGACC 24862 |||||| || | |||||| || ||||| |||| |||| | || || |||| |||||| Sbjct 180 CACCCACCGGCTCCGCACACACGCGGGGCCTTCTTCATGTGAAGGAGAACACCCATGACT 121 Query 24863 GCAGATGCGCAGGGCAACGACCTCAGCGCCGTTGGCGTTCCGATCACGGGACGGGCGGCG 24922 || ||| | ||||||||||||||| ||||||||||| |||||||| || || ||| Sbjct 120 GCCGATTCCCAGGGCAACGACCTCGAGGCCGTTGGCGTACCGATCACCGGCATCGCCGCG 61 Query 24923 TTCGCCCCGCTGGACCCGTCGAACGTCCTCACCAAGGCGCAGCTCGCCGCGCGCCCCCT 24981 ||||| ||| | | | | |||||| || |||||| ||||| ||| ||||||| Sbjct 60 TTCGCGCCGGTCGCCGTGGAGAACGTGATCGACAAGGCCACGCTCGGAGCGAGCCCCCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147852002961090