Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_009816.1
Length=70579
Score E
Sequences producing significant alignments: (Bits) Value
seq65714 141 4e-29
>seq65714
Length=2341
Score = 141 bits (156), Expect = 4e-29
Identities = 313/471 (66%), Gaps = 39/471 (8%)
Strand=Plus/Plus
Query 60116 CTTGGCAAGGCGGAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACG 60175
|||||| || |||||||| || || || | || || || || || ||||| || ||
Sbjct 1756 CTTGGCGAGCTCGAACGTGATGTCCGGCACCACGACACCGAGCGACAGCGTCTTGATGCG 1815
Query 60176 GATCTTCTCGTCGGCGTTTTCACGCTTGGTATCCAGGAA-CGCAAGGATGTCG------- 60227
|||||||||||| ||||| || ||||| || || ||||| ||| | |||||||
Sbjct 1816 GATCTTCTCGTCCGCGTTCTCGCGCTTCGTGTCGAGGAAGCGC-ATGATGTCGGGGTGGT 1874
Query 60228 ------------------------GGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCC 60263
|||||||| ||||| | || ||||| || || |||
Sbjct 1875 GGGCGTTGAGGNNNNNNNNNNNNNGGGTGGTGGGCGTTGAGGTACACCGCACCCGCACCC 1934
Query 60264 TGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGG 60323
|| | || || || ||||| | |||| |||||| ||||| || | |||||| || |||
Sbjct 1935 TGACGCGCGCCGAGCTGGTTGGCGTAGCTGAAGCTGTCTTCGAGGAGCTTCATGACCGGG 1994
Query 60324 ATGACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCTCCTGCCTCGCGGAGGT 60381
|||| || |||| ||| ||||||| | ||| ||||| || || |||||||||| ||
Sbjct 1995 ATGATGCCCGAGGACTG--GTTCTCGATCTGCTTGATCGGGGCGCCCGCCTCGCGGATGT 2052
Query 60382 TGGAGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAGAGAGTCCTGAACGA 60441
| || | | | | || ||||| || ||||| || ||||| || | | | | |
Sbjct 2053 TCGACAGCAGCAGGGCCACGCCGCCGCCGCGCTTCGAGAGCTGCAGGGCGGAGTTGATGC 2112
Query 60442 TTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGC 60501
|| |||| ||| ||||| |||||| | || | |||||| || | | ||
Sbjct 2113 CGCGGGCGATCGACTCCATGTTGTCCTCGATGCGCAGCAGGAAGCAGCTGACGAGTTCGC 2172
Query 60502 CTGCG-TCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTTGCAGGCTGGAAG 60551
| ||| | | |||||||||||||||||||| || || |||||||||
Sbjct 2173 C-GCGCTGGGCCTTGCCCGCGTTGAGGAAGGTCGGGGTGGCCGGCTGGAAG 2222
Score = 109 bits (120), Expect = 2e-19
Identities = 246/365 (67%), Gaps = 16/365 (4%)
Strand=Plus/Plus
Query 58455 ATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCT 58514
|||||||| | | ||| | |||||| ||||||||||| || ||| |||||
Sbjct 422 ATGTAGTAGATGGTCTTGATGCCCTTACGCCAGGCGTAGATCTGGGCCTTGTTGATGTCA 481
Query 58515 CGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGA 58574
||||| || || || || |||||||||||| || |||| ||||||||| || |
Sbjct 482 CGCGTGGTGGCGGTGTCCTTGAAGAACAGCGTCAGCGACAGGCCCTGGTCGACGTGCTGC 541
Query 58575 GATGCTACAGCGTACATATCAATGATCGGGT--TAGGTCCGATAGCGTAAGCG--CTATC 58630
| || | ||||| | || |||| | | ||| ||||| |||| ||| ||
Sbjct 542 GTGGCCGCGGCGTAGGTGTCGATGACCTTCTCGTAG--CCGATCTCGTACGCGTCCTGGT 599
Query 58631 AATTGATTCTACATTCTCATTGGTCA----CTCCGTACTGAGGGTAATAGACTCGACCAA 58686
| | | || | || || || |||| | ||| ||||| ||||| ||||| |
Sbjct 600 AGT--ACTCCAGGTTGTCGTTCGTCATGAACGCCGCC----GGGTAGTAGACGCGACCGA 653
Query 58687 GCTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCAT 58746
|||| || |||||||| | ||| | |||| | ||||| ||||||| || | |
Sbjct 654 GCTTGCCTTCCTTGCGGATCTCGATCTTCGAGGCGATCGGGTGGATCGAGGAGGTCGAGT 713
Query 58747 GGTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATAC 58806
||| ||||| ||||| ||||| || || || | ||||| |||||||||||||| || |
Sbjct 714 TGTTGATGTAGGAGATCGAGCCCGTCGGCGGCACGGCCTGCAGGTTCTGGTTGTAGATGC 773
Query 58807 CATGC 58811
| |||
Sbjct 774 CGTGC 778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 225111666272900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |