Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq65714 141 4e-29 >seq65714 Length=2341 Score = 141 bits (156), Expect = 4e-29 Identities = 313/471 (66%), Gaps = 39/471 (8%) Strand=Plus/Plus Query 60116 CTTGGCAAGGCGGAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACG 60175 |||||| || |||||||| || || || | || || || || || ||||| || || Sbjct 1756 CTTGGCGAGCTCGAACGTGATGTCCGGCACCACGACACCGAGCGACAGCGTCTTGATGCG 1815 Query 60176 GATCTTCTCGTCGGCGTTTTCACGCTTGGTATCCAGGAA-CGCAAGGATGTCG------- 60227 |||||||||||| ||||| || ||||| || || ||||| ||| | ||||||| Sbjct 1816 GATCTTCTCGTCCGCGTTCTCGCGCTTCGTGTCGAGGAAGCGC-ATGATGTCGGGGTGGT 1874 Query 60228 ------------------------GGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCC 60263 |||||||| ||||| | || ||||| || || ||| Sbjct 1875 GGGCGTTGAGGNNNNNNNNNNNNNGGGTGGTGGGCGTTGAGGTACACCGCACCCGCACCC 1934 Query 60264 TGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGG 60323 || | || || || ||||| | |||| |||||| ||||| || | |||||| || ||| Sbjct 1935 TGACGCGCGCCGAGCTGGTTGGCGTAGCTGAAGCTGTCTTCGAGGAGCTTCATGACCGGG 1994 Query 60324 ATGACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCTCCTGCCTCGCGGAGGT 60381 |||| || |||| ||| ||||||| | ||| ||||| || || |||||||||| || Sbjct 1995 ATGATGCCCGAGGACTG--GTTCTCGATCTGCTTGATCGGGGCGCCCGCCTCGCGGATGT 2052 Query 60382 TGGAGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAGAGAGTCCTGAACGA 60441 | || | | | | || ||||| || ||||| || ||||| || | | | | | Sbjct 2053 TCGACAGCAGCAGGGCCACGCCGCCGCCGCGCTTCGAGAGCTGCAGGGCGGAGTTGATGC 2112 Query 60442 TTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGC 60501 || |||| ||| ||||| |||||| | || | |||||| || | | || Sbjct 2113 CGCGGGCGATCGACTCCATGTTGTCCTCGATGCGCAGCAGGAAGCAGCTGACGAGTTCGC 2172 Query 60502 CTGCG-TCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTTGCAGGCTGGAAG 60551 | ||| | | |||||||||||||||||||| || || ||||||||| Sbjct 2173 C-GCGCTGGGCCTTGCCCGCGTTGAGGAAGGTCGGGGTGGCCGGCTGGAAG 2222 Score = 109 bits (120), Expect = 2e-19 Identities = 246/365 (67%), Gaps = 16/365 (4%) Strand=Plus/Plus Query 58455 ATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCT 58514 |||||||| | | ||| | |||||| ||||||||||| || ||| ||||| Sbjct 422 ATGTAGTAGATGGTCTTGATGCCCTTACGCCAGGCGTAGATCTGGGCCTTGTTGATGTCA 481 Query 58515 CGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGA 58574 ||||| || || || || |||||||||||| || |||| ||||||||| || | Sbjct 482 CGCGTGGTGGCGGTGTCCTTGAAGAACAGCGTCAGCGACAGGCCCTGGTCGACGTGCTGC 541 Query 58575 GATGCTACAGCGTACATATCAATGATCGGGT--TAGGTCCGATAGCGTAAGCG--CTATC 58630 | || | ||||| | || |||| | | ||| ||||| |||| ||| || Sbjct 542 GTGGCCGCGGCGTAGGTGTCGATGACCTTCTCGTAG--CCGATCTCGTACGCGTCCTGGT 599 Query 58631 AATTGATTCTACATTCTCATTGGTCA----CTCCGTACTGAGGGTAATAGACTCGACCAA 58686 | | | || | || || || |||| | ||| ||||| ||||| ||||| | Sbjct 600 AGT--ACTCCAGGTTGTCGTTCGTCATGAACGCCGCC----GGGTAGTAGACGCGACCGA 653 Query 58687 GCTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCAT 58746 |||| || |||||||| | ||| | |||| | ||||| ||||||| || | | Sbjct 654 GCTTGCCTTCCTTGCGGATCTCGATCTTCGAGGCGATCGGGTGGATCGAGGAGGTCGAGT 713 Query 58747 GGTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATAC 58806 ||| ||||| ||||| ||||| || || || | ||||| |||||||||||||| || | Sbjct 714 TGTTGATGTAGGAGATCGAGCCCGTCGGCGGCACGGCCTGCAGGTTCTGGTTGTAGATGC 773 Query 58807 CATGC 58811 | ||| Sbjct 774 CGTGC 778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225111666272900