Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq222699 111 3e-19 >seq222699 Length=2956 Score = 111 bits (122), Expect = 3e-19 Identities = 298/453 (66%), Gaps = 2/453 (0%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || ||||| ||||| |||||||||| | ||||| || || || | || ||||| || Sbjct 506 TCCTTTGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGC 565 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| | || |||||||| ||| || ||||||| |||||| | || ||| Sbjct 566 TTCTGCTCGATATTTTGGCTAAAGAAGCGCGGCTTGATGCCCGGCCTCACCTTCTCCAAC 625 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 || |||| || || || || |||||| | |||| ||| || |||| || Sbjct 626 GAACTCATATCGCGAGATGAAGGGCTTCACTGCGACTTCGCGTGC-CTCTTGTACTCTCT 684 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 ||| || ||||| | ||| || || | || | ||||| ||||| | Sbjct 685 CCTCAGGAGGAAGCTCACCGACGAGCGCGTGAAGGAGATTGTGCGCGAAGCGGTTGACAT 744 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || | || || | |||||||| |||| || | | | || |||||| || || Sbjct 745 AGAGAGAGAGTTTGTGTGCGACGCGCTTCCCTGTGCGTTGGTGGGGATGAACGGGGAGCT 804 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| | || || || || || || || ||||| | | |||||||| | | ||| Sbjct 805 AATGAGTCAATATATTGAGTTTGTTGCGGACCGGTTGCTGGGTGCGCTTGGATGCGGGAA 864 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||| |||| ||||||| || |||||||| || || || || || ||||| Sbjct 865 GGTGTACGGTGTTCAGAATCCCTTTGACTGGATGGAGCTTATATCTCTCCAGGGCAAAAC 924 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| |||||||| || | || ||||| Sbjct 925 TAACTTCTTTGAAAAGCGCGTTGGGGACTATCA 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099714239827250